PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA032415-PA

Common Name

OsI_32504

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 189aa MW: 20909 Da PI: 9.6752

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA032415-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.5	8.7e-12	24	70	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ + f +L +++P+ +K +K+++L ++eY+++L+ BGIOSGA032415-PA 24 EHVIAERKRREKMHQQFTTLASIVPEI-----TKTDKVSVLGSTIEYVHHLR 70 699*********************7.....6***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.602	20	69	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-15	24	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-15	24	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-9	24	69	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.08E-10	25	74	No hit	No description
SMART	SM00353	1.9E-12	26	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MTKFCSPLSE MKRGGRRATS SMQEHVIAER KRREKMHQQF TTLASIVPEI TKTDKVSVLG 60 STIEYVHHLR ERVKVLQDIQ SMGSTQPPIS DARSRAGSGD DGNNNEVEIK VEANLQGTTV 120 LLRVVCPEKK GVLIKLLTEL EKLGLSTMNT NVVPFADSSL NITITAQIDN GSCTTVELVK 180 NLKSTLRNF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	33	ERKRRE
2	29	34	RKRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012618	0.0	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613484.1	1e-124	transcription factor bHLH18
TrEMBL	B8BFJ2	1e-136	B8BFJ2_ORYSI; Uncharacterized protein
STRING	ORGLA10G0001900.1	1e-123	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13896	17	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	4e-29	bHLH family protein