PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA032671-PA
Common NameOsI_33022
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 225aa    MW: 25915.8 Da    PI: 6.0379
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA032671-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR132.33.2e-1011525090
              FAR1 50 kerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                      ++ ++r  tr+gC akl++++++ +g+w v+++++eH+He+a
  BGIOSGA032671-PA 11 RKMEPRDLTRCGCLAKLEIELNEeKGVWFVKEFDNEHTHEFA 52
                      677899****************99***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-71052IPR004330FAR1 DNA binding domain
Gene3DG3DSA:3.40.50.20001.7E-27127199No hitNo description
SuperFamilySSF537562.71E-20127199No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MELKHFERID RKMEPRDLTR CGCLAKLEIE LNEEKGVWFV KEFDNEHTHE FANPDHVATL  60
GVHRVMSDSQ KAQAVELRMS GLRPFQIMEV MENNHDELDE VGFVMKDLYN FFTQYKMKNI  120
KGHACFGDPG FEGWMRSIES EYKDKFRGWV GFTVLVSHRI TACCDILLMP SRFEPCGLNQ  180
LYAMQYGIVP VVHGTGGLRV KNQEGVANFD DILAKSVAFM VARVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4hln_A1e-39127199478550Starch synthase I
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.801531e-150root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976024521e-150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611098.17e-70protein FAR1-RELATED SEQUENCE 5
RefseqXP_015611182.18e-70protein FAR1-RELATED SEQUENCE 5
TrEMBLB8BG501e-168B8BG50_ORYSI; Uncharacterized protein
STRINGONIVA02G10690.16e-71(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2646122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-15FAR1-related sequence 5