PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA032700-PA
Common NameOsI_33087
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 240aa    MW: 26963.3 Da    PI: 7.0834
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA032700-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY444.3e-141788259
                      --SS-EEEEEEE--TT-SS-EE..........EEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
              WRKY  2 dDgynWrKYGqKevkgsefprs..........YYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59
                       Dg+ WrKYG K++k+s fpr           YYrC+++   +C+++k v++++  dp +  +tY   H+++
  BGIOSGA032700-PA 17 TDGHLWRKYGEKKIKNSSFPRRwcktvaiyrlYYRCSYRddrNCMATKVVQQENdADPPLYRVTYIHPHTCN 88
                      7*******************854555555555******99999*******9865269************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182902.35E-161289IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.7E-191588IPR003657WRKY domain
SMARTSM007745.1E-291689IPR003657WRKY domain
PROSITE profilePS5081110.7741790IPR003657WRKY domain
PfamPF031067.6E-171887IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MQEGHPTCVN LTPIPHTDGH LWRKYGEKKI KNSSFPRRWC KTVAIYRLYY RCSYRDDRNC  60
MATKVVQQEN DADPPLYRVT YIHPHTCNPS PPAPTPAHVF TEPPPAKAEV HHAVLFRFSS  120
TAGGHTANNA VHRQQWQPAA ATMAAGAQAQ LSMTMSDDER EQPPAAIRSA PPARRLSMFR  180
AVVDGLRQMR SSAPPTPSSS MVVDDGWDTF SSFDLDTCEF SVDDELLCGD HMYFPDSMQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0997740.0AC099774.6 Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613415.21e-152probable WRKY transcription factor 32
TrEMBLA2Z6120.0A2Z612_ORYSI; Uncharacterized protein
TrEMBLA3C3K90.0A3C3K9_ORYSJ; Uncharacterized protein
STRINGONIVA10G05410.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169931212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80590.13e-16WRKY DNA-binding protein 66