PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA032809-PA
Common NameOsI_33300
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CAMTA
Protein Properties Length: 995aa    MW: 111455 Da    PI: 5.9585
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA032809-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.19.5e-55201372118
              CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                       lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkD ++w+kkkdgktv+E+he+LK g+++vl+cyYah+een++
  BGIOSGA032809-PA  20 LKEaQQRWLRPAEICEILKNYKSFRIAPEPPNRPQSGSLFLFDRKVLRYFRKDSHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENEN 112
                       45559**************************************************************************************** PP

              CG-1  94 fqrrcywlLeeelekivlvhylevk 118
                       fqrr+yw+Lee++ +ivlvhyle+k
  BGIOSGA032809-PA 113 FQRRTYWMLEEDFMHIVLVHYLETK 137
                       **********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.74116142IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-7519137IPR005559CG-1 DNA-binding domain
PfamPF038591.2E-4822135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.4E-6415501IPR013783Immunoglobulin-like fold
PfamPF018331.7E-8416494IPR002909IPT domain
SuperFamilySSF812962.8E-18416502IPR014756Immunoglobulin E-set
SuperFamilySSF484032.64E-15608711IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.2E-16610713IPR020683Ankyrin repeat-containing domain
CDDcd002041.88E-11611709No hitNo description
PROSITE profilePS5029715.433617711IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.736650682IPR002110Ankyrin repeat
SuperFamilySSF525405.04E-8809863IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.37812834IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.748813842IPR000048IQ motif, EF-hand binding site
PfamPF006120.022814833IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0059835857IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.542837860IPR000048IQ motif, EF-hand binding site
PfamPF006121.9E-4838857IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 995 aa     Download sequence    Send to blast
MAADARRFAV VPQLDIAQIL KEAQQRWLRP AEICEILKNY KSFRIAPEPP NRPQSGSLFL  60
FDRKVLRYFR KDSHNWRKKK DGKTVKEAHE RLKSGSIDVL HCYYAHGEEN ENFQRRTYWM  120
LEEDFMHIVL VHYLETKGGK SRTRGNNDMH QAAVMDSPLS QLPSQTIDGE SSLSGQFSEY  180
EEAESGNYQG QHAMGHTTNF YSSSQHDSPL VLSDPNLELE NNGHESLWNG VMKTDEGTVQ  240
MTHLQPPVHP EQGMFTTEGQ GVEYLTFDEV YSDGLSLKDI GAAGADVEPF WQFSSNSYLT  300
EAIAFQLSSA TADISATENS VQQNDGSLGA AIGFPFLKTQ SSNLSDILKD SFKKSDSFTR  360
WMSKELLDVE DSQIQSSSGA YWNTEEADSI IEASSREPLD QFTVAPMVLQ DQLFSIVDFS  420
PSWTYSGSKT KVLVTGRFLH ANEVTERCKW SCMFGEVEIQ AEISADGTLR CYSPPHKPGR  480
VPFYVTCSNR LACSEVREFE FRPSDSQYMD APSPLGATNK VYFQIRLDNL LSLGPDVYQA  540
TITNPSKEMI DLSKKISSLL ANNDEWSKLL KLADDNEPLS HDQQDQYAEN LIKEKLHVWL  600
LHKVGNGGKG PSVLDDEGLG VLHLAAALGY DWAIRPTVTA GVNINFRDFH GWTALHWAAF  660
CGRERTVVAL IALGAAPGAL TDPHPNYPAE STPADLASAN GHKGISGFLA ESSLTSHLQA  720
LNLKEANMSE ISGLPGIGDI TERNASQPAI GDSLGAVRNA AQAAARIYQV FRVQSFQRKQ  780
AVQYEGDKGG ISDEHTLSLL SMKPSKSGQL DPLHAAASRI QNKYRGWKGR KEFLLFRQRI  840
VKIQAHVRGH QVRKHYRKIV WSVGIVEKVI LRWRRRRAGL RGFRPTEGAI ESSSGGTSSN  900
LVTDKPAGDD YDFLQEGRKQ TEERLQKALA RVKSMVQYPE ARDQYQRILN VVSKMQESQT  960
VQEKILDEST EMDEGDFMSE FKELWDDDTP LPGYF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.250480.0callus| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329866880.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1051160.0AK105116.1 Oryza sativa Japonica Group cDNA clone:001-100-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614396.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLB8BGI50.0B8BGI5_ORYSI; Uncharacterized protein
STRINGONIVA10G07730.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.10.0ethylene induced calmodulin binding protein