PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA032902-PA
Common NameOsI_33553
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 112aa    MW: 12714.5 Da    PI: 5.2186
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA032902-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.63.8e-131196387
               NAM  3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvka.eekew..yfFskrdkkyatgkrknratksgyWkatg 87
                      +G+rF P+d el+   L +k++g++  ++e ++++++i++++P +L +++++ ee+e   yfFs+ + +    k  +ra++ g+Wk   
  BGIOSGA032902-PA 11 AGVRFLPKDLELL-AILDAKLRGSPlGPVEAIFHDTQILDFHPYKLYEMYAEdEEEEGyiYFFSTMQFRC--RKIVERAAQGGRWKVNN 96
                      7************.78*********54555569*************743333133333347777776665..57899*********654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-166110IPR003441NAC domain
PROSITE profilePS5100514.6819112IPR003441NAC domain
PfamPF023657.8E-61199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MAAPEGQNKF AGVRFLPKDL ELLAILDAKL RGSPLGPVEA IFHDTQILDF HPYKLYEMYA  60
EDEEEEGYIY FFSTMQFRCR KIVERAAQGG RWKVNNCETL EVGGVAVGRK SP
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329961512e-91
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0276604e-89AC027660.2 Oryza sativa Japonica Group chromosome 10 clone BAC nbxb0045B21, complete sequence.
GenBankAK1109424e-89AK110942.1 Oryza sativa Japonica Group cDNA clone:002-173-H02, full insert sequence.
GenBankAP0149664e-89AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126184e-89CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876515.13e-76uncharacterized protein LOC4348617
TrEMBLA0A0E0IS196e-75A0A0E0IS19_ORYNI; Uncharacterized protein
TrEMBLA0A0E0IS207e-75A0A0E0IS20_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QZ307e-75A0A0E0QZ30_ORYRU; Uncharacterized protein
TrEMBLA2Z7804e-78A2Z780_ORYSI; Uncharacterized protein
TrEMBLA3C4Q27e-75A3C4Q2_ORYSJ; Uncharacterized protein
STRINGORUFI10G10350.11e-75(Oryza rufipogon)
STRINGONIVA10G09240.11e-75(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367