PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA033038-PA
Common NameOsI_33795
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 178aa    MW: 20867.9 Da    PI: 10.685
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA033038-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.9e-0786133348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                        WT  E   lv++v ++G g+W+   r +     Rt  ++k++w+++l
  BGIOSGA033038-PA  86 HWTIKEVTNLVQGVSKHGVGRWTELKRDFFstSIRTSVHLKDKWRNLL 133
                       6****************************99989************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.5379137IPR017930Myb domain
SuperFamilySSF466893.51E-1581169IPR009057Homeodomain-like
SMARTSM007170.001683135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-1086134IPR009057Homeodomain-like
CDDcd116603.47E-1987134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MEDIFQPAHE DDIHHLLQGP QDEADLDKWL ADFIPKDGCK RGPRGARKRQ TFPSRGARTR  60
RAFPLQQLCF GTTRDKRCRL RKNNDHWTIK EVTNLVQGVS KHGVGRWTEL KRDFFSTSIR  120
TSVHLKDKWR NLLKACGIDF TSTAKGNAQK TMLWPLDKRL IEQITQLAYK HPYPRQKY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.464870.0flower| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329816680.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0716450.0AK071645.1 Oryza sativa Japonica Group cDNA clone:J023105M22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613839.11e-122uncharacterized protein LOC4348738 isoform X2
TrEMBLB8BH531e-130B8BH53_ORYSI; Uncharacterized protein
STRINGORGLA10G0101900.11e-125(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.18e-18TRF-like 6