PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA033267-PA
Common NameOsI_34293
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 1681aa    MW: 184916 Da    PI: 7.5074
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA033267-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.8e-0616611680525
                        --SGGGGTS--TTTTT-SS-S CS
           zf-CCCH    5 lCrffartGtCkyGdrCkFaH 25  
                        +Cr ++++G+C+ G +C+F H
  BGIOSGA033267-PA 1661 ICR-YYENGYCRKGTSCQFLH 1680
                        799.6666************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.104.1E-850111IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579037.04E-851110IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.50255121IPR019787Zinc finger, PHD-finger
CDDcd155681.00E-1957102No hitNo description
SMARTSM002491.9E-657103IPR001965Zinc finger, PHD-type
PROSITE patternPS01359058118IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001510.0081271356IPR019835SWIB domain
SuperFamilySSF475922.62E-20273353IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.106.7E-25274356IPR003121SWIB/MDM2 domain
PfamPF022012.8E-15278351IPR003121SWIB/MDM2 domain
SMARTSM007197.3E-56409519IPR004343Plus-3 domain
PROSITE profilePS5136024.555409544IPR004343Plus-3 domain
SuperFamilySSF1590423.01E-31409533IPR004343Plus-3 domain
PfamPF031263.9E-23414518IPR004343Plus-3 domain
SuperFamilySSF552772.88E-14710768IPR003169GYF domain
PROSITE profilePS5082914.216713765IPR003169GYF domain
SMARTSM004446.0E-12714767IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.2E-14715768IPR003169GYF domain
PfamPF022138.2E-9716757IPR003169GYF domain
PROSITE profilePS5010313.73216561681IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.51E-516591680IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-516611680IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010964Biological Processregulation of chromatin silencing by small RNA
GO:0032776Biological ProcessDNA methylation on cytosine
GO:0034968Biological Processhistone lysine methylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 1681 aa     Download sequence    Send to blast
MGAPAHQHQH QHQHPPAVGP PVVVKRKRGR PPKNRDGAAP PPPPKPVKKR EDDEDVVCFI  60
CFDGGNLVVC DKKGCTKVYH PACIKRDESF FRSRAKWTCG WHLCSTCEKA VQYMCYTCTY  120
SLCKGCIKQK PVKFFGVRGN KGFCDTCYST ILLIESKDDR AKAKVDFDDK NNWEYLFKLY  180
WLDLKGKHSL TLEELVNAKS CWTVRSTSAR REKEDSSNDL YDANFDLDAS SDGASRKRRR  240
NSFSGKRGRK RQNNGAESLP KRVQNEGMTF IGDTQWASSE LLEFIGHMRN GDISYISQFD  300
VQILLLEYVK QKNLRDPRRK SQIICDARLA NLFRKPRVGH FEMLKLLEMH FHAKETVNGD  360
GQKGIDSDSA QIDSGGYSDM PSKLCSDNRR KIHKKIERES PANLEDYAAI DMHNINLIYL  420
RRSLLEDLID DNGTFSDKIT GAFVRIRTPC VGQKQDIYRL VKVLGTHKVA ERYSVGKKTT  480
DHALEILNLD KKEVITMDTI SNQDFTEEEC KRLRQSMKCG LITRLKVWLE NEKQRLSHLR  540
DRASETGRRK QYPFDLFGSP MLDQRFACLW ECVEKLQLLG TPEERARIIN EDPEVHVDPC  600
MSPDYESAEE LDVKKAVDST SRNGSDLLFL GRKGIETNSL QNHRQNCSAT SHHTTTSPPT  660
EGMTHGQGEE GNINLLSRNG CDILEPSIDL NNIACETASF ASSEIVSGDM EPEKVWHYKD  720
PSGSVQGPFT LLQLSKWAAY FPRDLRIWLT FESEQNSLLL NEVLSKQQKD FIQPSPKVDN  780
NRSTWEGVGQ DRVDSSLTGN NSSSPIGYNV IYSSRLPSPS ADYRASAREG PNLPSGTLPF  840
MTSQKTQKDP QMLHGQAQHQ GDYSCTIPSS VVSYRPAGSH DEWPPRGNIG EWNNSQDSGG  900
MWSPTTPHMS RSNLEHQPDR CITKKQLQND SKRNTLAGSA ENLNSQMDFG SQKVHIPTPQ  960
QPERDLATSV GTSRQFEFKT CHQEGSHWSS TADSITHDGL QLSLASAKPE SCSAVNPIRD  1020
GDSSSASRVP NQSGAHVYSP PHPATTNLSK SEETMNQCKS CEPEASNKSR KPDASHAPVN  1080
QHPKPESDPV LPDTQDFERT HPSPSTEHDT KEQLKDQSRS TSVAPEGSGT KAHGQSSIAF  1140
ISEASGPLSS KIVGLQPPKD TSFLVERDIK DGGSITQTEQ QKEESTAFKK ENVAVDPISD  1200
SEAIVSGVLE SLTETYNLHE ETALENFTPT SAEEEQPQCS TPIALSPWDE TSDYQGEAVD  1260
SALWGVQDDQ NNEMWSLSSP TPTLQPSGIG ADTKGASCAI EEVIVAQGNS GVVEPSPALE  1320
KKRIEKVPSA SIDRGVPEQV KPKSDAALSP EESRKPSGLQ LSSTYLQGST KSSGLPPSGT  1380
SLDGGIEPSG LLPSGTSLEW GTKISGVQSS ASSLEGSKKA FVRQPSGSSL EGNTKASGRQ  1440
PSGSSIEGSK KPSDRQPSGA SQEGNTKPSG WQQSVSSLEG GTKPSGWKPS ISIDTNTKAS  1500
GWLRSSSSPD VGRKASALQS SGSSPVAGSS KASGWQPSPR ESSKSKPNST WGAGQSRNSS  1560
SHQSTTPTAK YSSETPRRQG NNNTNSAGWG DSLGNKSWHS PSGNASSRGS HSSHHHDRHN  1620
QSSEPWRGGS NHSRRSDHRQ EHGNGGSSRS SSSRGQSQRG ICRYYENGYC RKGTSCQFLH  1680
R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235239RKRRR
2236250KRRRNSFSGKRGRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.467870.0panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329705390.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614387.10.0zinc finger CCCH domain-containing protein 19 isoform X2
TrEMBLB8BHV00.0B8BHV0_ORYSI; Uncharacterized protein
STRINGOPUNC10G14000.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27091822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.11e-176nucleic acid binding;zinc ion binding;DNA binding