PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA033523-PA
Common NameOsI_37054
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 164aa    MW: 18615.8 Da    PI: 6.6231
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA033523-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000247294123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C  Cg++F+++  L  H  +H
  BGIOSGA033523-PA 72 FECRTCGRRFPSHQALGGHRTSH 94
                      89*************99998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.2E-107196IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3257299IPR007087Zinc finger, C2H2
SuperFamilySSF576672.09E-772134No hitNo description
SMARTSM003550.0927294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
PROSITE profilePS501579.099112139IPR007087Zinc finger, C2H2
SMARTSM003551.1112134IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-9112136IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MDQQEDYTSD LQLELEEEDD DQLSQLAELD VQLSLACGST TAMSSSGDEE DEEPRRRKRR  60
SRRREEEAAP AFECRTCGRR FPSHQALGGH RTSHLRPTTN KRRPGPSKPL IHACEVCGLG  120
FQMGQALGGH MRRHRPRNID LGHKQIVMPE IRPSSSLQLL DLFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15357PRRRK
25462RRRKRRSRR
35664RKRRSRRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.943470.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616383.11e-77zinc finger protein ZAT1
TrEMBLA2ZH051e-115A2ZH05_ORYSI; Uncharacterized protein
STRINGORGLA11G0188000.13e-99(Oryza glaberrima)
STRINGOBART11G23480.11e-95(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.14e-19C2H2 family protein