PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA033524-PA
Common NameOsI_37049
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 168aa    MW: 17873.3 Da    PI: 10.8738
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA033524-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000234567123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C  Cg++Fs+   L  H  +H
  BGIOSGA033524-PA 45 FQCRTCGRRFSTFQALGGHRTSH 67
                      89**********99998888877 PP
2zf-C2H218.45.8e-0699121123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C  Cgk+F +   L  H+r+H
  BGIOSGA033524-PA  99 HRCDMCGKVFATGQALGGHMRRH 121
                       79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.9E-43768IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.0E-104469IPR007087Zinc finger, C2H2
SMARTSM003550.134567IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8664572IPR007087Zinc finger, C2H2
SuperFamilySSF576673.54E-94567No hitNo description
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SuperFamilySSF576673.54E-994121No hitNo description
PfamPF139123.0E-1298122IPR007087Zinc finger, C2H2
SMARTSM003550.002899121IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.4E-499121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.47199121IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MEVATNTATR SPVKLMLVLT LSPASKVIAK GGGGVKRVHL DGGAFQCRTC GRRFSTFQAL  60
GGHRTSHKRP RVRADGLDLL LGARPGKLGA GGASTPVVHR CDMCGKVFAT GQALGGHMRR  120
HRPLVSRNGT MSTTWTAAAA ATTMSGSSSE ERDDDDDDVH NYNFIHFL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.158740.0callus| leaf| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329904350.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3058660.0AY305866.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616529.15e-94zinc finger protein ZAT8
TrEMBLA2ZH011e-119A2ZH01_ORYSI; Uncharacterized protein
TrEMBLQ7X9N71e-119Q7X9N7_ORYSJ; C2H2 type zinc finger transcription factor ZFP17
STRINGORUFI11G25330.11e-100(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-22C2H2 family protein