PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA033525-PA
Common NameOsI_37048
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 168aa    MW: 18986.3 Da    PI: 7.1667
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA033525-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000257698123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C  Cg++F+++  L  H  +H
  BGIOSGA033525-PA 76 FECRTCGRRFPSHQALGGHRTSH 98
                      89*************99998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.5E-1075100IPR007087Zinc finger, C2H2
SMARTSM003550.0927698IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.26E-776138No hitNo description
PROSITE profilePS5015710.32576103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SMARTSM003551.1116138IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-9116140IPR007087Zinc finger, C2H2
PROSITE profilePS501579.099116143IPR007087Zinc finger, C2H2
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDQQEDYTSD LQLELEEEED DNQLSQLAEL DVQLSLSLAC GSTTAMSSSG DEEDAEPRRR  60
KRRRRRRDEE AAAAAFECRT CGRRFPSHQA LGGHRTSHLR PTTNKRRPGP SKPLIHACEV  120
CGLGFQMGQA LGGHMRRHRP RNIDLGHKQI VMPEIRPSSS LQLLDLFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15660PRRRK
25865RRKRRRRR
35866RRKRRRRRR
45963RKRRR
55966RKRRRRRR
65967RKRRRRRRD
76065KRRRRR
86066KRRRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.943470.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1340450.0AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence.
GenBankAK2433070.0AK243307.1 Oryza sativa Japonica Group cDNA, clone: J100055D19, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616383.13e-83zinc finger protein ZAT1
TrEMBLA2ZH001e-119A2ZH00_ORYSI; Uncharacterized protein
STRINGORGLA11G0188000.11e-106(Oryza glaberrima)
STRINGOBART11G23480.11e-102(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-16C2H2 family protein