PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA033569-PA
Common NameOsI_36959
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 260aa    MW: 29054.3 Da    PI: 8.102
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA033569-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.46.1e-233699258
                      --SS-EEEEEEE--TT-SS-....EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY  2 dDgynWrKYGqKevkgsefp....rsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
                      dDg++WrKYGqK+v+g+ +p    +sY+rC+++   gC+++kkv+r++ dp +v+++Y+g H +
  BGIOSGA033569-PA 36 DDGFSWRKYGQKDVEGAMHPttqsKSYFRCAHKmttGCKARKKVQRTDGDPLMVDVVYKGVHSC 99
                      8***************988755558*******9999**************************98 PP
2WRKY68.78.7e-22137197259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       dDgy+W++YGqK++ g+++pr YYrC ++   gC+++k+ + ++ dp +++++Y+geH+++
  BGIOSGA033569-PA 137 DDGYSWKRYGQKNIFGANYPRCYYRCIHKtttGCTATKNAQATDGDPLLFDVVYHGEHTCD 197
                       8*************************877777***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-2230100IPR003657WRKY domain
SuperFamilySSF1182901.18E-203399IPR003657WRKY domain
SMARTSM007741.1E-3235101IPR003657WRKY domain
PROSITE profilePS5081117.8213698IPR003657WRKY domain
PfamPF031061.8E-213699IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-24125197IPR003657WRKY domain
PROSITE profilePS5081120.461131199IPR003657WRKY domain
SuperFamilySSF1182902.09E-22132198IPR003657WRKY domain
SMARTSM007741.8E-31136198IPR003657WRKY domain
PfamPF031068.8E-22137197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGVLKVGAYI NLCILHNRKE PQMERRKVIR MSYTEDDGFS WRKYGQKDVE GAMHPTTQSK  60
SYFRCAHKMT TGCKARKKVQ RTDGDPLMVD VVYKGVHSCA GVHSDSQRSS AASSKSNLRP  120
TKSMQVRASS KDVGPPDDGY SWKRYGQKNI FGANYPRCYY RCIHKTTTGC TATKNAQATD  180
GDPLLFDVVY HGEHTCDLQS THSNDVEPIR PQSGLDDDMC TDDTTTVSTR HDSNTDASSI  240
SFQLDWTNCK DESDGPPTTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-1536196568OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.738351e-178callus| panicle| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1356441e-176AC135644.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0085H07, complete sequence.
GenBankAP0149671e-176AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126191e-176CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616376.21e-116probable WRKY transcription factor 53
TrEMBLA2ZGQ00.0A2ZGQ0_ORYSI; Uncharacterized protein
STRINGORGLA11G0184200.11e-150(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3095334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.27e-23WRKY DNA-binding protein 26