PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA033765-PA
Common NameOsI_36560
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 588aa    MW: 67413.3 Da    PI: 6.4726
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA033765-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA39.76.8e-13186218131
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyr 31 
                       C+nCg ++  Tp++R++p+g+k+ CnaCGl+++
  BGIOSGA033765-PA 186 CTNCGESSdaTPMMRHAPNGTKSFCNACGLMWA 218
                       ********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.29596131IPR010399Tify domain
SMARTSM004013.6E-5180233IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-7182220No hitNo description
Gene3DG3DSA:3.30.50.106.5E-11185219IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.54E-8185217No hitNo description
PfamPF003209.7E-11186218IPR000679Zinc finger, GATA-type
PfamPF136213.2E-17339583No hitNo description
SuperFamilySSF511971.51E-41422583No hitNo description
Gene3DG3DSA:2.60.120.6503.2E-25427578No hitNo description
SMARTSM005585.0E-5428588IPR003347JmjC domain
PROSITE profilePS5118436.424437588IPR003347JmjC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MDNPTPSSSS GGGGAAAAAN ASSDEHRKTS PATAADFFDE EHTFDDILLP VDLFDFTHGL  60
DAGDGCYVDD QAAIGQKPLS PAPEPAAEQQ PSPAPEHGDD ERLVMYYQGQ EYVFDPVQPQ  120
KIENIFHHLN GQEMIPQSIR PQPTNLVRPI TVPEDFDRMK RSKGKFAPRV QTSENSLAHR  180
KGITFCTNCG ESSDATPMMR HAPNGTKSFC NACGLMWANS VDLMRKRLQW LKYEMKKKEW  240
IEAHEQEKTM KKKMEETAKI WEDSKRPIDI TVHLTWKRKK EQLVYRDRKY ALCSHTEQQR  300
AQERENVPYF KYKKDKQTTG VNMKKRQDVT DKELQLAWTL LYLNQVSSTI SLLLELMENK  360
NNKLLHKLKY FGAEKINEAY HWVQDNRYKF RTEVYGPVLL EVNIQDKAHA SYLEGHVPNY  420
IWKEERPLYL FDAKFTEKVP EMGRDYEVPA YFREDLFGVL GEERPDHRWV IIGPAGSGSS  480
FHVDPNSTSA WNAVIKGAKK WVMFPPEVVP PGVHPSADGA EVTSPVSIME WFMNFYGACK  540
TWEKRPVECI CRAGEVVFVP NGWWHLVINL EESIAITQNY TQDFVVRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ld8_A1e-34402580110288Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6
3ldb_A1e-34402580110288Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.352790.0leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329782380.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1088710.0AC108871.3 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0077M24, complete sequence.
GenBankAK0682200.0AK068220.1 Oryza sativa Japonica Group cDNA clone:J013145N15, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8BL630.0B8BL63_ORYSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158801213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-17ZIM-like 1