PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA033769-PA
Common NameOsI_36552
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 267aa    MW: 29535.9 Da    PI: 6.7157
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA033769-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA421.3e-13216251134
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C+nCg ++  Tp++R++p+g+k+ CnaCGl+++  +
  BGIOSGA033769-PA 216 CTNCGESSdaTPMMRHAPNGTKSFCNACGLMWANSR 251
                       ********************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.50795130IPR010399Tify domain
PROSITE profilePS5101711.112157199IPR010402CCT domain
PfamPF062036.3E-12157197IPR010402CCT domain
SMARTSM004011.4E-7210263IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-8212260No hitNo description
CDDcd002027.52E-10215267No hitNo description
Gene3DG3DSA:3.30.50.104.0E-12215255IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.1E-11216250IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDNPTPSSSA GGGAAAAANA SSDEHRKTSP ATAADFFDEE HTFDDILLPV DLFDFTHGLD  60
AGDGCYVDGQ AAIGQKPLSS APEPAAEQQP SPALEHGDDE RLVMYYQGQE YVFDSVQPQK  120
IENIFHHLNG QEMIPQSIRP QPTNQVRPIT VPEDFDRFAA LTRYREKKRN IKFIKKADYS  180
ARKEVALRMK RSKGKFAPTV QSSENSLAHR KGITFCTNCG ESSDATPMMR HAPNGTKSFC  240
NACGLMWANS RKIRKIRNPT SGEQEDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616301.11e-180GATA transcription factor 19
TrEMBLA2ZFJ70.0A2ZFJ7_ORYSI; Uncharacterized protein
STRINGOGLUM11G17080.11e-155(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158801213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.11e-35ZIM-like 1