PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA033836-PA
Common NameOsI_36423
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 98aa    MW: 11229.7 Da    PI: 5.1605
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA033836-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM26.91.4e-082974248
               NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
                       p f+F Ptd+el++++L+ k++++k +l   i+ev+i++++ + ++
  BGIOSGA033836-PA 29 SPSFHFVPTDKELMDFHLRGKIKRRKPPL-YLINEVNIMRHDSEMIE 74
                      689***********************999.78*******99877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-82069IPR003441NAC domain
PfamPF023652.4E-53079IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MENGGNDGDG SAVPVVSWKH ELVSRLQLSP SFHFVPTDKE LMDFHLRGKI KRRKPPLYLI  60
NEVNIMRHDS EMIEIQGLWG RYVVLFHGEG AIEDEEEG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126191e-117CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8BKZ19e-66B8BKZ1_ORYSI; Uncharacterized protein
STRINGONIVA11G15810.13e-39(Oryza nivara)