PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA033939-PA
Common NameOsI_36217
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 318aa    MW: 34905.2 Da    PI: 8.0019
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA033939-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS20.54.8e-071353141
              GRAS  1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRl 41
                      lv+lLl+cA+ vs+gd+ +a + L  l+  asp gd+mqR+
  BGIOSGA033939-PA 13 LVHLLLACADLVSKGDHPAALRHLHLLRRVASPLGDSMQRA 53
                      68**************************************7 PP
2GRAS332.48.2e-10252317100374
              GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                       +aI ea++ge+rvH++D+di qG QWpa+lqaLa+Rp+gpp+lR+Tgvg+       +++etg+ La++A++l+vpfef++ +a+rle l++ 
  BGIOSGA033939-PA  52 RAIFEAFHGEDRVHVVDLDILQGYQWPAFLQALAARPGGPPTLRLTGVGH----PPAAVRETGRHLASLAASLRVPFEFHAAAADRLERLRPA 140
                       79************************************************....99*************************9999******** PP

              GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                       +L+ + gEalaVn v +lhr++      +s+ + +L+++++  Pk++++veqea hn++ Fl rfleal+yysa+fdsl+a++p+es +r+kv
  BGIOSGA033939-PA 141 ALHRRVGEALAVNAVNRLHRVP------SSHLPPLLSMIRDQAPKIITLVEQEAAHNGPYFLGRFLEALHYYSAIFDSLDATFPAESTARMKV 227
                       *********************9......445566*********************************************************** PP

              GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       E+ ll++ei+nvvacegaer++rhe+le+Wr+ +e  GF++vpls  a+ q + ll  ++ +dgyr+ e+sg+l+lgW+dr+++++SaWr
  BGIOSGA033939-PA 228 EQCLLAPEIRNVVACEGAERVARHERLERWRRLMEGRGFEAVPLSAAAVGQSQVLLGLYGaGDGYRLTEDSGCLLLGWQDRAIIAASAWR 317
                       *****************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.4071296IPR005202Transcription factor GRAS
PROSITE profilePS512575120No hitNo description
PfamPF035142.8E-9952317IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MVKVVEQDSG LQLVHLLLAC ADLVSKGDHP AALRHLHLLR RVASPLGDSM QRAIFEAFHG  60
EDRVHVVDLD ILQGYQWPAF LQALAARPGG PPTLRLTGVG HPPAAVRETG RHLASLAASL  120
RVPFEFHAAA ADRLERLRPA ALHRRVGEAL AVNAVNRLHR VPSSHLPPLL SMIRDQAPKI  180
ITLVEQEAAH NGPYFLGRFL EALHYYSAIF DSLDATFPAE STARMKVEQC LLAPEIRNVV  240
ACEGAERVAR HERLERWRRL MEGRGFEAVP LSAAAVGQSQ VLLGLYGAGD GYRLTEDSGC  300
LLLGWQDRAI IAASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-6949316114377Protein SCARECROW
5b3h_D3e-6949316114377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008680172.10.0DELLA protein GAI
RefseqXP_020178448.10.0DELLA protein RGL1-like
SwissprotG7L1661e-144RAM1_MEDTR; GRAS family protein RAM1
TrEMBLB8BKN50.0B8BKN5_ORYSI; Uncharacterized protein
STRINGORUFI11G15600.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92213141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-79RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]