PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA034052-PA
Common NameOsI_35991
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 489aa    MW: 54816.5 Da    PI: 7.3649
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA034052-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.11.9e-20110196190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       ++Y++YA+++GFs+rks+++ +   ++i++++ vCs++g+r +++++   +++++a+trt C+a+++ + +++g w v+k++leH+H la
  BGIOSGA034052-PA 110 DMYKSYARKIGFSIRKSTTRLR-PVKTIYQKHIVCSNQGERGKHSSH--VTSKENATTRTCCNARVQFNISREGIWTVQKVVLEHSHYLA 196
                       58**************998776.6667****************9988..89999*********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-17111196IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MDDPAVQPAI GGRTSSHPVL RSTLTPESDG IVEISMLEPC SADAIALPLS LIPTIEPIED  60
ASMGSAEPME DASIGSATTI APTEVDNMNG QSVIVPQVGM SFKSENDAYD MYKSYARKIG  120
FSIRKSTTRL RPVKTIYQKH IVCSNQGERG KHSSHVTSKE NATTRTCCNA RVQFNISREG  180
IWTVQKVVLE HSHYLASPNK KHMLRSEGMN NVFKKRFRRK LSLSKLLEEC DKCAMSLRDN  240
ELDADYKSRH STPVTYIRDL PMLKTAAELY TRRLYSEFEE HFKEQFSFSC KFLKSEGSIM  300
TYKVMPMEFQ EQNNNMFLSH VYCASMLSES LISMSAQYQK ELLDDMEKAI DKLDLEADNS  360
LSKIHTKTYE VSESSNGCVG DILKGKVSIR VPQVIKGPKN KRSKTVLLKK KGKKGNAAKK  420
KGEDPKKSTD NGEMIQDPDE LIGSFDANID DNMHEDFSTM VAPPIHGEYT SLLFGLDQDA  480
MAARKLHFD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.400121e-71panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329927281e-71
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629720.16e-77protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB8BKB90.0B8BKB9_ORYSI; Uncharacterized protein
STRINGSb04g027010.14e-60(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1508638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.12e-12FAR1-related sequence 8