PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA034216-PA
Common NameOsI_35672
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 600aa    MW: 67225.3 Da    PI: 7.908
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA034216-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.31.4e-2438128290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       fY++YA ++GF+vr sks  s+ ++ i++r+fvC+++g ++++++   ++k+rr+ra+ r  C a+l+v+++ +++w v++++l H+H+la
  BGIOSGA034216-PA  38 FYCTYAARAGFRVRSSKSFASRIDDAIIMRRFVCTRQGLPSRKDTLldASKKRRNRASARAACPAMLQVNRRPSSRWLVSRCVLLHSHPLA 128
                       9**************************************999988787999**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.9E-2338128IPR004330FAR1 DNA binding domain
PfamPF105511.5E-16220311IPR018289MULE transposase domain
PROSITE profilePS5096610.769483519IPR007527Zinc finger, SWIM-type
SMARTSM005751.7E-6494521IPR006564Zinc finger, PMZ-type
PfamPF044344.8E-6495518IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MPLGAAGDED AAAVTGPSSA GEPAAGMEFA SPEEARAFYC TYAARAGFRV RSSKSFASRI  60
DDAIIMRRFV CTRQGLPSRK DTLLDASKKR RNRASARAAC PAMLQVNRRP SSRWLVSRCV  120
LLHSHPLASS SSSADAAAAD AAEPNDSSSA EQDGGAAAAA AALAPGGGVA QGLLDHFRKL  180
QLDNPAFCYA VQIDRSGCIA NFIWVDARAR SLYRRFGDAV VLDLTCRRNR RAVPFAAFTG  240
MNHHRQAIVF GCALMTDESE NSFAWLLETW LAFMGGKKPM SFTIGYSRDV EMAAMKVFGG  300
DVRHRFCRRD IFFICKQKLA SLYSEHSTLK DELKECVTEL ERIDEFESTW RMLLSKYNLF  360
GNEWLQTIYS IRHQWVPAYL KDSFFEELHH YHYLRDIAFQ FDKAIARDYQ TELQEDFATF  420
SSKPVMKSSH PMEKQASELY TKVMFDLFQD ELIESSGFLV QNVESGDISR FEVTQSENAN  480
IRYTVLYSEP RASVSCSCHK FEFAGVLCRH ALRVLTAIGI PVLPENYILK RWTRNAKNNI  540
LSQVPANTKG SLAWRCNDLC RDGIRFAEEG ATSEEIYKTA KEALQKAFAE ILPQSEAHLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.986150.0panicle| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615544.10.0protein FAR1-RELATED SEQUENCE 9
RefseqXP_025877014.10.0protein FAR1-RELATED SEQUENCE 9
TrEMBLB8BJV90.0B8BJV9_ORYSI; Uncharacterized protein
STRINGORGLA11G0071600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.21e-103FAR1-related sequence 3