PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA034224-PA
Common NameOsI_35664
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ZF-HD
Protein Properties Length: 357aa    MW: 37572.6 Da    PI: 7.3468
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA034224-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer57.92.4e-18142180342
       ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalk 42 
                       +v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +al+
  BGIOSGA034224-PA 142 AVKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALN 180
                       689*************************9.9999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.4E-16143180IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.8E-18144180IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-14145179IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152318.702145198IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466898.69E-22244318IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-32246319IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-27257313IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MVSILQLQTR TEASPASSAS AAATRIFAVR RQQQEQEGEE EEEEFEFQER MDLSGAQGEL  60
PIPMHASTAA SPFAGMGAHG GAGGGHVVEL HRHEHVGNNG QAMAMASPPP TNVAVAAEQE  120
GSPVAGKKRG GMAVVGGGGG VAVKYRECLK NHAAAIGGNA TDGCGEFMPS GEEGSLEALN  180
ITRTAAALVA GGDPYGAAYA AARALPPPPP PPPHGHHHHH QIIMPLNMIH TSESDEMDVS  240
GGGGGGGRGG GSSSSSKKRF RTKFTAEQKA RMLEFAERVG WRLQKLDDAM VHHFCQEIGV  300
KRRVLKVWMH NNKHNLAKKP LPSSPPPPPQ IPPMSMPPSP PPMPMPMPPS PPQLKLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-242563151675ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239251SGGGGGGGRGGGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.762210.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567643290.0
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876888.11e-124zinc-finger homeodomain protein 4
SwissprotQ53N871e-125ZHD4_ORYSJ; Zinc-finger homeodomain protein 4
TrEMBLB8BJV40.0B8BJV4_ORYSI; Uncharacterized protein
STRINGONIVA11G08220.11e-127(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-45homeobox protein 31