PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA034227-PA
Common NameOsI_35658
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 154aa    MW: 16731.1 Da    PI: 9.7015
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA034227-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-181766255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr +k +g+Wv+eIr+p   gk++r++lg+f ++e+Aa a++ a+++l+g
  BGIOSGA034227-PA 17 QYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESPEMAAVAHDVAALRLRG 66
                      69****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.62E-221775IPR016177DNA-binding domain
PROSITE profilePS5103223.671774IPR001471AP2/ERF domain
SMARTSM003801.5E-361780IPR001471AP2/ERF domain
CDDcd000182.44E-301775No hitNo description
Gene3DG3DSA:3.30.730.101.5E-311775IPR001471AP2/ERF domain
PfamPF008474.9E-121866IPR001471AP2/ERF domain
PRINTSPR003671.8E-121829IPR001471AP2/ERF domain
PRINTSPR003671.8E-125676IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEVVVMQNGG GGEMAGQYRG VRKRKWGKWV SEIREPGKKT RIWLGSFESP EMAAVAHDVA  60
ALRLRGRDAR LNFPAIAHRF RRPDTAEPGD VRAAALEAAA QVRFTPDLLV VAGGDDAGRR  120
CCSAGEAEAA AVTPYASCPH LIMYQQLNTN RLVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-171774563ATERF1
3gcc_A4e-171774563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616190.23e-71ethylene-responsive transcription factor ERF022
SwissprotQ9C9I21e-34ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA2ZCZ61e-109A2ZCZ6_ORYSI; Uncharacterized protein
STRINGONIVA11G08160.15e-78(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.13e-27ERF family protein