PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA034518-PA
Common NameOsI_35063
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 507aa    MW: 55294.9 Da    PI: 6.9008
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA034518-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS303.45.4e-93344814374
              GRAS   4 lLlecAeavssgdlelaqalLarlsel...aspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPil 91 
                       +LlecA +v++g +e+a+++Lar   l   a+ +g  p +Rla  ++  La+rl+r v+ + +al  ps     +  ++ aa++ f+e+sP++
  BGIOSGA034518-PA  34 ALLECAAHVETGPMEKATRCLARATGLaaaAAAAGdGPRKRLAVAMVDCLARRLLRPVQAITDALiDPSVYL--DRRSVRAARRGFFELSPFP 124
                       79*********************888854455566469***********************99995444443..34555578899******** PP

              GRAS  92 kfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                       k+++++ N+aI+eave+e+ vH++ ++   +q+ QW+ Ll++L  Rpegpp  +R+T+v++    + e l +++e  ++ Aeelg++f+f+  
  BGIOSGA034518-PA 125 KVAFVVGNRAIVEAVENESLVHVVGMSgpFTQPCQWIQLLHELRRRPEGPPrVVRLTVVHD----DGELLAKMEELVSDEAEELGMEFQFHG- 212
                       **************************86679****************9988789*******....***************************. PP

              GRAS 182 vakrledleleeL....rvkpgEalaVnlvlqlhrll........................................................ 214
                       v+ +ledl++++L    ++k+gEal+V++ lqlhrll                                                        
  BGIOSGA034518-PA 213 VVGQLEDLDFSNLrnvlEIKSGEALVVSCTLQLHRLLaadddamyssrsahlnqmasiaqlqhmavnscpsssgggsvqykdddpyrspatpl 305
                       7999****9999866667889************************************************************************ PP

              GRAS 215 ............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres........eerikvEr 287
                                   + +++l     ++L++v+ lsPk++vv+eq+adhn+ sF +rf+eal++y+a+fdsl+a ++++s        +er+ vEr
  BGIOSGA034518-PA 306 tfvsppvstphfQTPAAL----ASFLSAVRALSPKILVVAEQDADHNGVSFRKRFCEALHHYAAVFDSLDAAAATTSaasrlwspDERAQVER 394
                       *****9986555555555....55*********************************************99988888888999999******* PP

              GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       +++g+ei+ v+   ga+rre h +l++W +r+e+aGF+ vpls+ a  + + ++r+++ +  + +e  g+l+l+W++rpL+s+SaWr
  BGIOSGA034518-PA 395 VVVGEEIKGVLLRDGAHRREWHDRLRQWAARMEMAGFTGVPLSYAAIRKGNDMVRRCGLRRCENKECGGCLLLCWSSRPLYSISAWR 481
                       **********************************************************887999999*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.4335461IPR005202Transcription factor GRAS
PfamPF035141.9E-9034481IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MFSGTDASSP ELSLCSPYGP WTQGRSPTEE LGLALLECAA HVETGPMEKA TRCLARATGL  60
AAAAAAAGDG PRKRLAVAMV DCLARRLLRP VQAITDALID PSVYLDRRSV RAARRGFFEL  120
SPFPKVAFVV GNRAIVEAVE NESLVHVVGM SGPFTQPCQW IQLLHELRRR PEGPPRVVRL  180
TVVHDDGELL AKMEELVSDE AEELGMEFQF HGVVGQLEDL DFSNLRNVLE IKSGEALVVS  240
CTLQLHRLLA ADDDAMYSSR SAHLNQMASI AQLQHMAVNS CPSSSGGGSV QYKDDDPYRS  300
PATPLTFVSP PVSTPHFQTP AALASFLSAV RALSPKILVV AEQDADHNGV SFRKRFCEAL  360
HHYAAVFDSL DAAAATTSAA SRLWSPDERA QVERVVVGEE IKGVLLRDGA HRREWHDRLR  420
QWAARMEMAG FTGVPLSYAA IRKGNDMVRR CGLRRCENKE CGGCLLLCWS SRPLYSISAW  480
RPAASRGSGS GSKRSEYVHV GAEPDDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-143748224379Protein SCARECROW
5b3h_D2e-143748224379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619131.10.0scarecrow-like protein 3
TrEMBLB8BJ180.0B8BJ18_ORYSI; Uncharacterized protein
STRINGOS11T0141700-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-66scarecrow-like 3