PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA034529-PA
Common NameOsI_35042
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 220aa    MW: 24501.1 Da    PI: 4.8093
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA034529-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.43.8e-121792273
               NAM  2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkr 73
                      p G+ F P+ e+l+ +yL++ ++g++ e+  ++++e+d+y ++P +L +   ++ ++ k+wyf ++r+  +  g+r
  BGIOSGA034529-PA 17 PSGYFFVPKPEQLIRDYLNHWITGRPSEElRDIVREADVYGSDPATLTEahsAYGHDGKSWYFLTRRRVIEGYGDR 92
                      89************************66515679999**********84344444577899*99999876666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-1814134IPR003441NAC domain
PROSITE profilePS5100513.42116184IPR003441NAC domain
PfamPF023652.7E-517111IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MAEEDDKKQK GPDVTVPSGY FFVPKPEQLI RDYLNHWITG RPSEELRDIV READVYGSDP  60
ATLTEAHSAY GHDGKSWYFL TRRRVIEGYG DRQAFEYRAP GNKKTDWLME EIASNLPAAI  120
TDEGIMVICK VYLSPRAKEA TANEEERQET NVVPGPKRLR EAEATGYDAP APPQPDVGCS  180
YSGGGETSQA TASMDYCCST TTHTADDTSS GQCRLLPRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664975.16e-60PREDICTED: NAC domain-containing protein 76-like, partial
TrEMBLB8BJ051e-163B8BJ05_ORYSI; Uncharacterized protein
STRINGOBART12G02170.11e-133(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.12e-09NAC domain containing protein 63