PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA034613-PA
Common NameOsI_34880
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 263aa    MW: 29759.3 Da    PI: 6.2671
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA034613-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY599.2e-19105169259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59 
                       +Dg++WrKYGqK +  ++++rsYYrC+ +   gCp++k v++ ++ +    k++++ Y g+H+++
  BGIOSGA034613-PA 105 NDGHQWRKYGQKWISRAKHSRSYYRCANSkvqGCPATKTVQQMDSSGngtsKLFNVDYYGQHTCR 169
                       8*************************9887889********99876522226899*******995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-2290169IPR003657WRKY domain
PROSITE profilePS5081114.66599146IPR003657WRKY domain
SuperFamilySSF1182901.14E-19100169IPR003657WRKY domain
SMARTSM007741.2E-28104170IPR003657WRKY domain
PfamPF031067.8E-22105169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MIEHQKALMV ELRGMVMPLL PSDNEQAKLA LQLLGDILSC SDKAISMLEL GGDTKKLTNL  60
VGGKRKGDKH SMDNHNLEEE AKESVSKRRK NAEHTGSTVA QAPHNDGHQW RKYGQKWISR  120
AKHSRSYYRC ANSKVQGCPA TKTVQQMDSS GNGTSKLFNV DYYGQHTCRG DGIADPYVVD  180
TAHHSMEPIN QNECNSPTLE HEAHEVQDER FENLCMVQNM PEYLIDFELE RAFEFIVNSP  240
LGSEHWTFDD SIRCEHSPIC IWG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.148820.0callus| flower| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154870150.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7811120.0AY781112.1 Oryza sativa (indica cultivar-group) WRKY DNA-binding protein (WRKY89) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616437.10.0probable WRKY transcription factor 67
TrEMBLA0A0E0IXG00.0A0A0E0IXG0_ORYNI; Uncharacterized protein
TrEMBLB8BIR40.0B8BIR4_ORYSI; Uncharacterized protein
TrEMBLB9G9250.0B9G925_ORYSJ; Os11g0117400 protein
TrEMBLQ2RBB90.0Q2RBB9_ORYSJ; WRKY DNA binding domain containing protein, expressed
STRINGONIVA11G01230.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133251529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-18WRKY DNA-binding protein 46