PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA034703-PA
Common NameOsI_033718, SCR1
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 601aa    MW: 64382.1 Da    PI: 6.2063
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA034703-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.95.8e-1262345942374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkf 93 
                        +lLl+cAe v++++l +a+++L ++ ela+p g+++qR+aayf+eA++arl++s+ +ly+ l +ps+++ + + +++aa+++f+ +sP++kf
  BGIOSGA034703-PA 234 LTLLLQCAESVNADNLDEAHRALLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLpNPSPAAARLHGRVAAAFQVFNGISPFVKF 326
                       579************************************************************777777777799999*************** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                       sh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g+    s e+le+tg+rL++fA++lg+pfef + va++ 
  BGIOSGA034703-PA 327 SHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMEALEATGKRLSDFADTLGLPFEFCP-VADKA 414
                       ********************************************************....***************************.7**** PP

              GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                        +l++e+L v ++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv++veq+++h s+sFl+rf+ea++yysalfdsl+a+++++s
  BGIOSGA034703-PA 415 GNLDPEKLGVTRREAVAVHWLR--HSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDLSH-SGSFLARFVEAIHYYSALFDSLDASYSEDS 500
                       ********************99..999999999999....**********************.899*************************** PP

              GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                        er++vE++ll+rei+nv+a  g +r+ + + +++Wre+l ++GF+  +l  +aa+qa lll +++sdgy++ ee+g+l lgWkd  L+++Sa
  BGIOSGA034703-PA 501 PERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRVSSLAGSAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASA 592
                       *************************999987.************************************************************* PP

              GRAS 373 Wr 374
                       Wr
  BGIOSGA034703-PA 593 WR 594
                       *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.864207574IPR005202Transcription factor GRAS
PfamPF035142.0E-123234594IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007275Biological Processmulticellular organism development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MVRKRPASDM DLPPPRRHVT GDLSDVTAAA APSSASAQLP ALPTQLPAFH HTDMDLAAPA  60
PPPPQQQVAA GEGGPPSTAW VDGIIRDIIA SSGAAVSVAQ LIHNVREIIR PCNPDLASIL  120
ELRLRSLLTS DPAPPPPPPP SHPALLPPDA TAPPPPPTSV AALPPPPPPQ PDKRRREPQC  180
QEQEPNQPQS PKPPTAEETA AAAAAAAAAA LAAAKERKEE QRRKQRDEEG LHLLTLLLQC  240
AESVNADNLD EAHRALLEIA ELATPFGTST QRVAAYFAEA MSARLVSSCL GLYAPLPNPS  300
PAAARLHGRV AAAFQVFNGI SPFVKFSHFT ANQAIQEAFE REERVHIIDL DIMQGLQWPG  360
LFHILASRPG GPPRVRLTGL GASMEALEAT GKRLSDFADT LGLPFEFCPV ADKAGNLDPE  420
KLGVTRREAV AVHWLRHSLY DVTGSDSNTL WLIQRLAPKV VTMVEQDLSH SGSFLARFVE  480
AIHYYSALFD SLDASYSEDS PERHVVEQQL LSREIRNVLA VGGPARTGDV KFGSWREKLA  540
QSGFRVSSLA GSAAAQAALL LGMFPSDGYT LIEENGALKL GWKDLCLLTA SAWRPIQASG  600
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.02175953380Protein SCARECROW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160124960.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1809610.0AB180961.1 Oryza sativa Japonica Group OsSCR mRNA for SCARECROW, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615402.10.0protein SCARECROW 1
SwissprotA2ZAX50.0SCR1_ORYSI; Protein SCARECROW 1
TrEMBLA0A0E0RD240.0A0A0E0RD24_ORYRU; Uncharacterized protein
STRINGOS11T0124300-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein