PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA034825-PA
Common NameOsI_35160
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 130aa    MW: 13984 Da    PI: 11.7416
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA034825-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM23.41.7e-07123106128
               NAM 106 LvfykgrapkgektdWvmheyrl 128
                       +vfy+grap+g+kt+W m+ey++
  BGIOSGA034825-PA   1 MVFYQGRAPTGTKTRWKMNEYKA 23 
                       89*******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.897156IPR003441NAC domain
SuperFamilySSF1019417.06E-8155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MVFYQGRAPT GTKTRWKMNE YKAVADDADA AAAAMLHPMA PPRLRNELGV CRVYISTGTL  60
RSFDRRPLDN QAAAPTQQQV MPSLTAAAAV NTNLCGGGGG VVFAGAQGDS SPRLQLVVGV  120
ARTRRRRRRV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123128RRRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.546230.0callus| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329914860.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1099390.0AK109939.1 Oryza sativa Japonica Group cDNA clone:002-154-A12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615861.11e-74NAC domain-containing protein 90
TrEMBLA2ZBK82e-89A2ZBK8_ORYSI; Uncharacterized protein
STRINGORUFI11G03420.14e-74(Oryza rufipogon)
STRINGOS11T0154500-014e-74(Oryza sativa)
STRINGONIVA11G03690.14e-74(Oryza nivara)
STRINGORGLA11G0032800.14e-74(Oryza glaberrima)
STRINGORGLA12G0180300.14e-74(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.23e-18NAC domain containing protein 61