PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA035149-PA

Common Name

OsI_35854

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 1158aa MW: 131683 Da PI: 8.2093

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA035149-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.8	4.9e-15	607	693	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgk..wevtkle.leHnHel 89 kfY++YA ++GF+++ks+++k r+ +C++egk+ ++ ++ +++r+r+++++gCka +k++ ++ dgk +v++++ l+HnH+l BGIOSGA035149-PA 607 KFYQTYACHAGFDIKKSRTHKA-------FREVCCTREGKHVSKVTD-GDRQRRRPSKKIGCKAYVKLRHNYdDGKitSVVYDVVeLQHNHPL 691 6**************99887.......7899******9999.99999*************98644411345544349***9 PP FAR1 90 ap 91 +p BGIOSGA035149-PA 692 TP 693 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54001	6.87E-21	372	575	No hit	No description
Pfam	PF02902	2.3E-6	451	570	IPR003653	Ulp1 protease family, C-terminal catalytic domain
Gene3D	G3DSA:3.30.310.130	7.9E-7	460	564	No hit	No description
Pfam	PF03101	4.3E-10	607	693	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006508	Biological Process	proteolysis
GO:0008234	Molecular Function	cysteine-type peptidase activity

Sequence ? help Back to Top
Protein Sequence Length: 1158 aa Download sequence Send to blast
MDRTDPDTMC ISIDDDRKIQ ITPRTVRLVL GTPLGGNDIV LPSHKVVRTV HESITDELGM 60 HKKARLSAKQ LIEVIKSQKD DPRAVRYFIM VLMSKLLVRT TDFYVPKGDV WVASDLDRVA 120 AIDWSKAVFR ALSDSIRCWR QNLASSIASC VVFLAVLYLD NILPPRDIGL DLTFTPRIQM 180 FTKDIVDKLV AADQEAGGDG TPPFGNLPLR PLESTCYANK PAGRAKGPMV EDIRAPAYTF 240 PNMSTIIGPH LAGLPPDQRL GLLESLAEYD RQAKESAMEI ERQFRLVVDK QHMLCQSVID 300 ALQANRLWAE TNEDTDDVNS MPGSQPKRFI QKPARFVSPV VVGPSIMPSD VSLSVQLRDF 360 LLNNGGRMDS MKLMEIDSYV AYGNDVVNSF STGNQTEGLF IDAFSSILFK DDRRNRPDIF 420 GKRIFFSTSV SYLLHSDFIK INGETHDFSL DDLAGHLHEY FQNVQTTKAQ MIMVPVLHHD 480 HWSLYAINIA HRRVDIMDSN NYNLIGTLES DHHRALSKRI VKRLSDALHE VAPKSFCRFG 540 GFRKNMMKCP KMQICSNDCA FYIMWFMEAY DGNRESIETL SIPGPSVPPH MVPTECMAFP 600 TYDDAYKFYQ TYACHAGFDI KKSRTHKAFR EVCCTREGKH VSKVTDGDRQ RRRPSKKIGC 660 KAYVKLRHNY DDGKITSVVY DVVELQHNHP LTPSPSAVKH MRAHKNRDDT VMQFVDTMQE 720 SHVPQSCIMG VLSDLHGGQE NIPFTSRDVE NSYFFVLSCT KIQMGVVNRT FPPDLCRKAA 780 NVRKENADDI NKLLEFFNEC TLQNTKFYWD AQLDENGVIK NLFWSHASSQ AEFANFGDAR 840 YDLEGCPTMK ALYDIREKWV PPFFRKDYCG RMTSTQRSES MNKLMKHKFV DHQTALHRFA 900 RRMLEVITDR KEKEAAETRA CSGKLVLAVR WPFVIQMSRL YTRAAFRLFE EALQDSTDFR 960 ITQDDNFCNG WLVSHTKQSE KHNWCQKQFK LIADVDAGVF TCECKQWEHT GSPLPKSRTK 1020 GRTHDPDEEV QLGAKGNKMC TRECGWCHLR DGHYANTCPT NPANFDKVMK ATNRGKGKRG 1080 RPRGSGRGRG RGTNAGCKVS TAVPRPTRRT RRSTREGPSL RRCLDDEWAA YAADYAAYTD 1140 DDLTNADDDI GCYESDST

Sequence ? help Back to Top

Protein Sequence Length: 1158 aa Download sequence Send to blast

MDRTDPDTMC ISIDDDRKIQ ITPRTVRLVL GTPLGGNDIV LPSHKVVRTV HESITDELGM  60
HKKARLSAKQ LIEVIKSQKD DPRAVRYFIM VLMSKLLVRT TDFYVPKGDV WVASDLDRVA  120
AIDWSKAVFR ALSDSIRCWR QNLASSIASC VVFLAVLYLD NILPPRDIGL DLTFTPRIQM  180
FTKDIVDKLV AADQEAGGDG TPPFGNLPLR PLESTCYANK PAGRAKGPMV EDIRAPAYTF  240
PNMSTIIGPH LAGLPPDQRL GLLESLAEYD RQAKESAMEI ERQFRLVVDK QHMLCQSVID  300
ALQANRLWAE TNEDTDDVNS MPGSQPKRFI QKPARFVSPV VVGPSIMPSD VSLSVQLRDF  360
LLNNGGRMDS MKLMEIDSYV AYGNDVVNSF STGNQTEGLF IDAFSSILFK DDRRNRPDIF  420
GKRIFFSTSV SYLLHSDFIK INGETHDFSL DDLAGHLHEY FQNVQTTKAQ MIMVPVLHHD  480
HWSLYAINIA HRRVDIMDSN NYNLIGTLES DHHRALSKRI VKRLSDALHE VAPKSFCRFG  540
GFRKNMMKCP KMQICSNDCA FYIMWFMEAY DGNRESIETL SIPGPSVPPH MVPTECMAFP  600
TYDDAYKFYQ TYACHAGFDI KKSRTHKAFR EVCCTREGKH VSKVTDGDRQ RRRPSKKIGC  660
KAYVKLRHNY DDGKITSVVY DVVELQHNHP LTPSPSAVKH MRAHKNRDDT VMQFVDTMQE  720
SHVPQSCIMG VLSDLHGGQE NIPFTSRDVE NSYFFVLSCT KIQMGVVNRT FPPDLCRKAA  780
NVRKENADDI NKLLEFFNEC TLQNTKFYWD AQLDENGVIK NLFWSHASSQ AEFANFGDAR  840
YDLEGCPTMK ALYDIREKWV PPFFRKDYCG RMTSTQRSES MNKLMKHKFV DHQTALHRFA  900
RRMLEVITDR KEKEAAETRA CSGKLVLAVR WPFVIQMSRL YTRAAFRLFE EALQDSTDFR  960
ITQDDNFCNG WLVSHTKQSE KHNWCQKQFK LIADVDAGVF TCECKQWEHT GSPLPKSRTK  1020
GRTHDPDEEV QLGAKGNKMC TRECGWCHLR DGHYANTCPT NPANFDKVMK ATNRGKGKRG  1080
RPRGSGRGRG RGTNAGCKVS TAVPRPTRRT RRSTREGPSL RRCLDDEWAA YAADYAAYTD  1140
DDLTNADDDI GCYESDST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	647	652	DRQRRR
2	1082	1091	RGSGRGRGRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012619	0.0	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8BK48	0.0	B8BK48_ORYSI; Uncharacterized protein
STRING	ORGLA03G0393200.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1425	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-15	FAR1-related sequence 5