PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035153-PA
Common NameOsI_35861
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 516aa    MW: 55757.4 Da    PI: 6.8006
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035153-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.45.4e-11101157155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+ ++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  BGIOSGA035153-PA 101 SIYRGVTKHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 157
                       57*******************4444.2455535555.779999**************98 PP
2AP251.42.8e-16200251155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  BGIOSGA035153-PA 200 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 251
                       57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.24E-18101167No hitNo description
SuperFamilySSF541711.24E-14101167IPR016177DNA-binding domain
PfamPF008472.4E-8101157IPR001471AP2/ERF domain
SMARTSM003805.7E-23102171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-11102166IPR001471AP2/ERF domain
PROSITE profilePS5103217.122102165IPR001471AP2/ERF domain
PRINTSPR003672.2E-6103114IPR001471AP2/ERF domain
CDDcd000182.73E-24200261No hitNo description
SuperFamilySSF541719.15E-18200261IPR016177DNA-binding domain
PfamPF008473.5E-11200251IPR001471AP2/ERF domain
SMARTSM003806.0E-33201265IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-18201260IPR001471AP2/ERF domain
PROSITE profilePS5103218.834201259IPR001471AP2/ERF domain
PRINTSPR003672.2E-6241261IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MAAAAAGHGR GGSSSVVGLS MIKNWLRSQP PPAVVGGEDA MMALAVSTSA SPPVDATAPA  60
CISPDGMGSK AADGGGAAEA AAAAAAQRMK AAMDTFGQRT SIYRGVTKHR WTGRYEAHLW  120
DNSCRREGQT RKGRQGGYDK EEKAARAYDL AALKYWGTTT TTNFPVSNYE KELDEMKHMN  180
RQEFVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFGTQEEAAE  240
AYDIAAIKFR GLNAVTNFDM SRYDVKSIIE SSNLPIGTGT TRRLKDSSDH TDNVMDINVN  300
TEPNNVVSSH FTNGVGNYGS QHYGYNGWSP ISMQPIPSQY ANGQPRAWLK QEQDSSVVTA  360
AQNLHNLHHF SSLGYTHNFF QQSDVPDVTG FVDAPSRSSD SYSFRYNGTN GFHGLPGGIS  420
YAMPVATAVD QGQGIHGYGE DGVAGIDTTH DLYGSRNVYY LSEGSLVADV EKEGDYGQSV  480
GGNSWVLPTP ESEMVEKADN VTVCHGMPLF SVWNDA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.880470.0callus| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976116650.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2876210.0AK287621.1 Oryza sativa Japonica Group cDNA, clone: J065066I09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876947.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-125BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA2ZDJ40.0A2ZDJ4_ORYSI; Uncharacterized protein
STRINGONIVA11G10300.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-117AP2 family protein