PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035289-PA
Common NameOsI_36154, WRKY72
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 245aa    MW: 26072.4 Da    PI: 8.6827
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035289-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.31.5e-33139197159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d++vv++tYeg+H+h+
  BGIOSGA035289-PA 139 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLSRDETVVVTTYEGTHTHP 197
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-35124197IPR003657WRKY domain
SuperFamilySSF1182908.76E-30131198IPR003657WRKY domain
PROSITE profilePS5081130.343134199IPR003657WRKY domain
SMARTSM007749.1E-40139198IPR003657WRKY domain
PfamPF031062.2E-27140197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MENFPILFAT QPTSSSTSSS YHFMSSSSGS HDHRHHHGLQ AGGNGGGGGG SLSHGLFMGS  60
SSSSIRMEEL SNSQQADDAV VDGGATRSPH GGDGDGAAGD DGGDAQAAAA AGGGGRKKGE  120
KKERRPRFAF QTRSQVDILD DGYRWRKYGQ KAVKNNKFPR SYYRCTHQGC NVKKQVQRLS  180
RDETVVVTTY EGTHTHPIEK SNDNFEHILT QMHIYSGLTP SSAAHASSSS PLFPSAAAAA  240
SHMFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27130198876Probable WRKY transcription factor 4
2lex_A2e-27130198876Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.558275e-51leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8282380.0CT828238.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112H02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615223.11e-128probable WRKY transcription factor 56
TrEMBLA0A0E0R8J70.0A0A0E0R8J7_ORYRU; Uncharacterized protein
TrEMBLQ6IEK90.0Q6IEK9_ORYSI; WRKY transcription factor 72
STRINGORUFI11G14770.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.15e-55WRKY DNA-binding protein 75
Publications ? help Back to Top
  1. Zhang ZL, et al.
    A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells.
    Plant Physiol., 2004. 134(4): p. 1500-13
    [PMID:15047897]
  2. Xie Z, et al.
    Annotations and functional analyses of the rice WRKY gene superfamily reveal positive and negative regulators of abscisic acid signaling in aleurone cells.
    Plant Physiol., 2005. 137(1): p. 176-89
    [PMID:15618416]