PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035327-PA
Common NameOsI_36236
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 300aa    MW: 33026.5 Da    PI: 7.0482
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035327-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM119.33.5e-37181481128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       l pGfrF+Ptd+elv +yL +++ + +l++  +i+++di++++Pwd+   v+++ek  +fF++++ ky+ ++r+nr++ +g+W+a g++ +++
  BGIOSGA035327-PA  18 LLPGFRFRPTDDELVIKYLYPRAFHVPLPC-AIITDIDIHQHNPWDIV-PVAEREKGKHFFTRKEVKYPGSRRSNRVAGNGFWRAAGSEVPIY 108
                       579***************************.88**************5.567789999*********************************** PP

               NAM  94 sk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k     ++ lvg+++tLvf+ g+++++e+t+W mhe++l
  BGIOSGA035327-PA 109 YKpdgaaDDMLVGMRRTLVFHYGKSRSAERTEWAMHEFQL 148
                       *9887777777***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-4012153IPR003441NAC domain
PROSITE profilePS5100539.14918217IPR003441NAC domain
PfamPF023651.7E-1920148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MANTGLSIPM VNGATIHLLP GFRFRPTDDE LVIKYLYPRA FHVPLPCAII TDIDIHQHNP  60
WDIVPVAERE KGKHFFTRKE VKYPGSRRSN RVAGNGFWRA AGSEVPIYYK PDGAADDMLV  120
GMRRTLVFHY GKSRSAERTE WAMHEFQLAG AGLLPRPMMR RATSNGSEPP CGCLEATIAK  180
KSDGLSATLR AKRDSAPLMR IKVEPDSSWV ICCIYKKRQR APPVVIPPVI GDVGEAIIPH  240
AIGDAREGQV HFIDFLGQPA RNDPSSPHSC TIDPSSLEEG SDESASDGED KDGDGMNEAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-281414811140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.876990.0callus| flower| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2139591380.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1073690.0AK107369.1 Oryza sativa Japonica Group cDNA clone:002-127-B02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615934.10.0NAC transcription factor 25
TrEMBLA2ZEL90.0A2ZEL9_ORYSI; Uncharacterized protein
STRINGONIVA11G14120.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-34NAC domain containing protein 83