PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035332-PA
Common NameOsI_36241
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 293aa    MW: 32287 Da    PI: 8.9032
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035332-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.91.8e-31251508128
               NAM   8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 
                       hPt+ elv +yL +++ + +l+  e+i +v+i++++Pwd+   +++++ek  yfF++++ k + ++r+nr+t++g+W++ g++k+v+ +  + 
  BGIOSGA035332-PA  25 HPTEGELVFHYLYRRAVNMPLPS-EFICDVNILRHNPWDIVpGALTEREKGKYFFMQKEIKCPGSRRSNRITSKGFWRSAGSEKPVYYSqgG- 115
                       9********************99.89**************54788889999************************************98551. PP

               NAM  98 el.....vglkktLvfykgrapkgektdWvmheyrl 128
                              vg+++tL+fy g+++++e+t+W m+e+rl
  BGIOSGA035332-PA 116 -GsdcmlVGMRRTLTFYLGNSRTAERTKWGMQEFRL 150
                       .234566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-3516161IPR003441NAC domain
PROSITE profilePS5100533.0118219IPR003441NAC domain
PfamPF023657.3E-1625150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MARVVLSTPI VNGATMHLPV VGMSHPTEGE LVFHYLYRRA VNMPLPSEFI CDVNILRHNP  60
WDIVPGALTE REKGKYFFMQ KEIKCPGSRR SNRITSKGFW RSAGSEKPVY YSQGGGSDCM  120
LVGMRRTLTF YLGNSRTAER TKWGMQEFRL AGNGLSPYPM MKHATGDGSK PPCNCAETTI  180
AKRNDGLSAV LRNVLAVTPL VETVVEPDGS WLICRIYRTR QRALPVIAPP AIENARETII  240
PLANGNAREG QVRFIDFLRQ GSHIESSSPC SCIVGPSLAE GSDESAGSVD QKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-211415011140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9401960.0FJ940196.1 Oryza sativa Japonica Group clone KCS246C06 NAM protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615934.11e-117NAC transcription factor 25
TrEMBLB8BKP90.0B8BKP9_ORYSI; Uncharacterized protein
STRINGONIVA11G14160.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-29NAC domain containing protein 83