PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035410-PA
Common NameOsI_36411
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YC
Protein Properties Length: 258aa    MW: 28268.5 Da    PI: 5.1115
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035410-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC59.86e-197861998
             NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                      +++P arikki++adedv +i+  +Pvl+s+a elf+ +l  r++  + ++  +tl+   ++++v r   fdfl+++v +
  BGIOSGA035410-PA  7 TRFPAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAKTLNSFHLKQCVRRYSSFDFLTEVVNK 86
                      579************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.1E-26372IPR009072Histone-fold
SuperFamilySSF471132.0E-20499IPR009072Histone-fold
PfamPF008086.1E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MRKKLGTRFP AARIKKIMQA DEDVGKIALA VPVLVSRALE LFLQDLIDRT YEITLQSGAK  60
TLNSFHLKQC VRRYSSFDFL TEVVNKVPDL GGADSCGDDR ALPRRRKALP NGSDPENEES  120
RSSKMAVRSA NISPRGRGRG RGRGRGRPPT KRKEVGYVQF EDESSMFADQ GEALPGEETV  180
PETIHGTESI PPSTHPPAEA PSAAEIPAPN PKVEEAKNDD HQPDWPMPDA IGNIGVGPSG  240
FGHLTVQVDE DEDYDNED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A4e-23271574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102106PRRRK
2136145RGRGRGRGRG
3136146RGRGRGRGRGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.67870.0flower| panicle| root| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166360950.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4649040.0AF464904.1 Oryza sativa repressor protein (DrAp1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615139.10.0dr1-associated corepressor
TrEMBLA0A0D3HMU40.0A0A0D3HMU4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0J2U10.0A0A0E0J2U1_ORYNI; Uncharacterized protein
TrEMBLA2ZF520.0A2ZF52_ORYSI; Uncharacterized protein
STRINGONIVA11G15710.10.0(Oryza nivara)
STRINGOBART11G16430.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-53nuclear factor Y, subunit C11