PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035534-PA
Common NameOsI_36658
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 307aa    MW: 33284.1 Da    PI: 9.3574
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035534-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.12.1e-0547120149
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC............................TTS-STCHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkas.........................kapskKlsKaeiLekAve 49 
                       +++ + erE+  Rd++N+ f eL ++l  ++                          +  +   Ka++L  A +
  BGIOSGA035534-PA  47 KKTHKAEREKLKRDQLNDLFVELSSMLVLDCaipilpfydpkkngsyavqfakispYPERQNSGKATVLGDAAR 120
                       678899*********************99665777777777777777777777764333333445555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-644145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-94674IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.99446125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-9102148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MPQVRNQNLG MVADTESSGS LGGSSNAASD KAVDGSLDKR SQEKAPKKTH KAEREKLKRD  60
QLNDLFVELS SMLVLDCAIP ILPFYDPKKN GSYAVQFAKI SPYPERQNSG KATVLGDAAR  120
VLRDLVSQVE SLRKEQSALL TERQYVGSEK NELQEENIML RAQILELHNE ICARMGNNHL  180
NQSNLAMSQP VANNGSNSAT QPVPHHIWGN GPNLAMVHPT NTLSPLHNQH HQSAGASQVY  240
ASRPQELQLF PGTSVSTERE RSRAGSGSTP ATSSGLTDSL PGQLRLSLPQ SSQEESSSGS  300
KKGRKKG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.272430.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329780350.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680170.0AK068017.1 Oryza sativa Japonica Group cDNA clone:J013132D22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617819.10.0transcription factor BHLH062-like isoform X1
TrEMBLB8BLB20.0B8BLB2_ORYSI; Uncharacterized protein
STRINGOGLUM11G18440.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129592124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.32e-27bHLH family protein