PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035598-PA
Common NameOsI_36781
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 56aa    MW: 6136.88 Da    PI: 4.8572
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035598-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS33.84.5e-11954259310
              GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhe 310
                       ++l+yy++lfd l+++      + +  Er+llg ei++vvacegaer+erhe
  BGIOSGA035598-PA   9 STLNYYATLFDGLQQS------TTAPAERVLLGMEIRSVVACEGAERVERHE 54 
                       689**********888......68899************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.424156IPR005202Transcription factor GRAS
PfamPF035141.6E-8954IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 56 aa     Download sequence    Send to blast
MAAHPASTST LNYYATLFDG LQQSTTAPAE RVLLGMEIRS VVACEGAERV ERHEWA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126191e-90CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA2ZG782e-33A2ZG78_ORYSI; Uncharacterized protein
TrEMBLA3CD452e-33A3CD45_ORYSJ; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.12e-10GRAS family protein