PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035674-PA
Common NameOsI_36952
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 136aa    MW: 15642.6 Da    PI: 9.978
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035674-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.22.9e-1867555127
               NAM  55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                        + w++F ++ +     +r nr+t sgyWk+ g+   v+s++++ vglkk++ fy+gr+p+g+kt+W ++e+ 
  BGIOSGA035674-PA   6 GEPWFYFRHHGRWM---HRMNRSTPSGYWKTAGTASFVYSADRHPVGLKKSMLFYRGREPSGRKTKWKIDEFW 75 
                       45799999988865...69****************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.3151114IPR003441NAC domain
SuperFamilySSF1019418.37E-19686IPR003441NAC domain
PfamPF023651.4E-7774IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MGAGAGEPWF YFRHHGRWMH RMNRSTPSGY WKTAGTASFV YSADRHPVGL KKSMLFYRGR  60
EPSGRKTKWK IDEFWALHNA ANGSEELLPQ LCRSRQNVGL MPRFPLSLCR LYSTKSSSER  120
HVLTTSSDEI SEDESD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126191e-147CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615335.17e-84disease resistance protein RGA5-like isoform X1
RefseqXP_015615336.17e-84disease resistance protein RGA5-like isoform X1
TrEMBLA2ZGP42e-97A2ZGP4_ORYSI; Uncharacterized protein
STRINGOMERI11G19160.16e-94(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2689955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-21NAC domain containing protein 90