PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA035676-PA

Common Name

OsI_36958

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB_related

Protein Properties

Length: 105aa MW: 12048.6 Da PI: 8.5233

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA035676-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.4	3.4e-18	31	78	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ lv+++ +G g+W++ ar g++Rt+k+c++rw++yl BGIOSGA035676-PA 31 RGPWTVDEDLTLVNYISDHGEGRWNALARAAGLKRTGKSCRLRWLNYL 78 89*********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.181	26	82	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-22	26	81	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-14	30	80	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-16	31	78	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.97E-23	32	105	IPR009057	Homeodomain-like
CDD	cd00167	4.09E-11	33	78	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.8E-8	82	105	IPR009057	Homeodomain-like
PROSITE profile	PS51294	7.481	83	105	IPR017930	Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MEMVLQRTSH HPVPGEQQEA AAELSSAELR RGPWTVDEDL TLVNYISDHG EGRWNALARA 60 AGLKRTGKSC RLRWLNYLRP DVKRGNFTAE EQLLILDLHS RWGNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-16	26	105	22	100	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.99900	1e-49	flower\| leaf\| seed

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32982426	1e-49

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269\|PubMed:11310740}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269\|PubMed:11310740}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY026332	1e-173	AY026332.1 Oryza sativa Myb transcription factor JAMyb mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618000.1	2e-71	transcription factor JAMYB
Swissprot	Q2QZJ8	2e-72	JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBL	A0A0E0RC24	5e-70	A0A0E0RC24_ORYRU; Uncharacterized protein
TrEMBL	A2ZGP9	1e-71	A2ZGP9_ORYSI; Uncharacterized protein
TrEMBL	A3CDU0	9e-71	A3CDU0_ORYSJ; Uncharacterized protein
STRING	ORUFI11G24630.1	9e-71	(Oryza rufipogon)
STRING	OS11T0684000-01	9e-71	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40350.1	2e-42	myb domain protein 24

Publications ? help Back to Top
Ahn IP,Kim S,Kang S,Suh SC,Lee YH Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct. Phytopathology, 2005. 95(11): p. 1248-55 [PMID:18943354] Campos-Soriano L,García-Martínez J,San Segundo B The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection. Mol. Plant Pathol., 2012. 13(6): p. 579-92 [PMID:22212404] Yokotani N, et al. Role of the rice transcription factor JAmyb in abiotic stress response. J. Plant Res., 2013. 126(1): p. 131-9 [PMID:22847900] Wang D, et al. Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response. Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007 [PMID:26740780] Fred AK,Kiswara G,Yi G,Kim KM Screening Rice Cultivars for Resistance to Bacterial Leaf Blight. J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45 [PMID:26869604]