PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA035973-PA

Common Name

OsI_38817

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 222aa MW: 25194.9 Da PI: 10.4231

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA035973-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.8	1.6e-15	10	58	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 +rW +eEd +l+ +v+q+G++ W++++++m+ ++R +k+c +rw +yl BGIOSGA035973-PA 10 QRWRPEEDAILLAYVRQYGPREWSLVSQRMNrpLHRDAKSCLERWKNYL 58 89*********************************************97 PP
2	Myb_DNA-binding	35	3.3e-11	64	108	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T +E+ l +++ +++G++ Wk+Ia++++ gRt+k + +w + BGIOSGA035973-PA 64 KGSLTDDEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 108 57789***************.*****.***999999766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.429	1	58	IPR017930	Myb domain
SMART	SM00717	6.1E-13	8	60	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.05E-21	10	103	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-20	11	65	IPR009057	Homeodomain-like
CDD	cd00167	1.26E-8	11	58	No hit	No description
Pfam	PF13921	4.0E-14	12	72	No hit	No description
PROSITE profile	PS51294	22.391	59	113	IPR017930	Myb domain
SMART	SM00717	1.4E-9	63	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-15	66	107	IPR009057	Homeodomain-like
CDD	cd00167	2.33E-6	68	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MQPPPMRESQ RWRPEEDAIL LAYVRQYGPR EWSLVSQRMN RPLHRDAKSC LERWKNYLRP 60 GIKKGSLTDD EQRLVIRLQA KHGNKWKKIA AEVPGRTAKR LGKWWEVFKE KQQRELRDRD 120 RRRLPPPLDG DERGGAGGRY DWLLEDFADK LVNDHHRRMM AAPILPPWMS SSPSSSSSPS 180 VTLSLASAAV APAPAAPPPT WGGGGGEVVV AELMECCSAW AK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	3e-16	12	105	7	97	MYB PROTO-ONCOGENE PROTEIN
1mse_C	3e-16	12	105	7	97	C-Myb DNA-Binding Domain
1msf_C	3e-16	12	105	7	97	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for normal cell differentiation. May interact with other proteins to repress the knox homeobox genes (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT828749	0.0	CT828749.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA053P05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620377.1	1e-116	protein rough sheath 2 homolog
Swissprot	Q94IB1	1e-117	RS2_ORYSJ; Protein rough sheath 2 homolog
TrEMBL	B8BML7	1e-159	B8BML7_ORYSI; Uncharacterized protein
STRING	OBART12G16450.1	1e-142	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5190	36	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	2e-65	MYB family protein