PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA036561-PA
Common NameOsI_37608
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 341aa    MW: 34956.4 Da    PI: 4.869
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA036561-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.3e-20155204255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae+Aa+a++ a+++++g
  BGIOSGA036561-PA 155 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEDAARAYDGAALRFRG 204
                       8********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.51E-30154214No hitNo description
SMARTSM003801.1E-36155218IPR001471AP2/ERF domain
PROSITE profilePS5103225.462155212IPR001471AP2/ERF domain
PfamPF008473.8E-13155204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-33155213IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-22155213IPR016177DNA-binding domain
PRINTSPR003674.7E-12156167IPR001471AP2/ERF domain
PRINTSPR003674.7E-12178194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MCCTGDEVAG PGEQRRRPLD ADAGGDEGAV ATTSSSLLAA PMLSRRRQAE EMAAMVSALA  60
SVVAGGGGTS LPAKRPAERE PEEGAAVEGV WWSYCSELAA AAAAAPSPAA PFPAGYVPSP  120
GQHSPASAAA GDEEELPSPS SADSSGGGGG TARKRYRGVR QRPWGKWAAE IRDPHKAARV  180
WLGTFDTAED AARAYDGAAL RFRGSRAKLN FPEHATLPPP PPTTTAAAHR CPPPPRTDAL  240
LESQELSPGS GGGDPYSQYA RFLQGSGGDG GEAAARPGGG ASQRTPPATT LLYSFEGDAA  300
SAACLWQPES GGGGMGWPAT SPAAWLEYGF YPPPERRDTD T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-24154212463ATERF1
3gcc_A6e-24154212463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157ARKRYRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.549320.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329923340.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071250.0AK107125.1 Oryza sativa Japonica Group cDNA clone:002-124-B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619856.10.0ethylene-responsive transcription factor ERF110
TrEMBLB8BND00.0B8BND0_ORYSI; Uncharacterized protein
STRINGORUFI12G04720.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.19e-24ethylene response factor 110