PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA036588-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TALE
Protein Properties Length: 256aa    MW: 27727.6 Da    PI: 9.1903
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA036588-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.46.6e-101231601954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  BGIOSGA036588-PA 123 FEHflHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVR 160
                       664459******************************98 PP
2BELL60.24.9e-201433072
              BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                      +q v+++Fea+ag gsa+ YtslAl++iSr+FrcL+daia q+
  BGIOSGA036588-PA  1 MQGVAAAFEAAAGAGSATTYTSLALRTISRQFRCLRDAIAAQV 43
                      899*************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075269.6E-15140IPR006563POX domain
PROSITE profilePS5007111.904101164IPR001356Homeobox domain
CDDcd000864.23E-11104165No hitNo description
SMARTSM003897.8E-10104168IPR001356Homeobox domain
SuperFamilySSF466898.55E-18105171IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-29107170IPR009057Homeodomain-like
PfamPF059201.2E-18121160IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MQGVAAAFEA AAGAGSATTY TSLALRTISR QFRCLRDAIA AQVRAASRGL GEDCGDDEGG  60
GGGGRTTVGS RLRFIDHQLR QQRAMQQLGM VHAAAAGGAA GGGWRPQRGL PERAVSVLRA  120
WLFEHFLHPY PKDSDKVMLA KQTGLTRSQV SNWFINARVR LWKPMVEEMY AEETKAKEEE  180
EEEHDAAAAA AGDRCXXXXX XXXXXXXXXX XXXERGAYTG SAAPMAFQKT AYDHRASSHS  240
RRSASPTAIL LLGNPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A2e-18110168159Homeobox protein Meis2
5bng_B2e-18110168159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.274230.0flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379904360.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1208440.0AK120844.1 Oryza sativa Japonica Group cDNA clone:J023022M14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619926.21e-133LOW QUALITY PROTEIN: BEL1-like homeodomain protein 1
SwissprotQ9SJ564e-74BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA2ZIB21e-135A2ZIB2_ORYSI; Uncharacterized protein
STRINGOGLUM12G04370.11e-134(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.36e-63BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]