PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA036664-PA
Common NameOsI_37405
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 365aa    MW: 39588.4 Da    PI: 4.2797
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA036664-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.22.9e-18171432126
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgk.....rknr.atksgyWk 84 
                       p G+ F P+ e+l+ +yL++ ++g+++e+  ++++e+d+y ++P +L +   ++ ++ k+wyf + ++ k  +g      r nr +   g+W+
  BGIOSGA036664-PA  17 PSGYFFVPKPEQLIRDYLNHWITGRPIEElRDIVREADVYGSDPATLTEahrAYGHDGKSWYFLTVAKWKGGRGGagtagRLNRcVEGGGTWH 109
                       89************************87725569999**********8434344457789****999999884434445599**666699*** PP

               NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                       ++ + + +        g ++ + +   rap  +ktdW+m+e 
  BGIOSGA036664-PA 110 NSQRRRVIEG-----YGDRQAFEY---RAPGNKKTDWLMEEI 143
                       9988666654.....899999998...599999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-2114165IPR003441NAC domain
PROSITE profilePS5100521.86516165IPR003441NAC domain
PfamPF023652.2E-1017142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAEEDDKKQK GPDVTVPSGY FFVPKPEQLI RDYLNHWITG RPIEELRDIV READVYGSDP  60
ATLTEAHRAY GHDGKSWYFL TVAKWKGGRG GAGTAGRLNR CVEGGGTWHN SQRRRVIEGY  120
GDRQAFEYRA PGNKKTDWLM EEIASNLPAA ITDEGIMVIC KVYLSPRAKE ATADEEERQE  180
TNVVPGPKRL REAEATGYDA PAPETPQPDV GCSYSGGGET SQATASMDYC CSTTTHTADD  240
TANAAAYYYG DVDAIKPDAY DGGDYGIGIN ADGELVLCGN GHGGIGTQGQ MPLAMQNTNG  300
EMTLFSPMNG YGVGFNEEVR QEPQVGGEVE MNDFFNDLFV DFDGAGDPNP NPNEGGDSHG  360
HILCE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664975.11e-74PREDICTED: NAC domain-containing protein 76-like, partial
TrEMBLA2ZHW80.0A2ZHW8_ORYSI; Uncharacterized protein
STRINGOS12T0137000-000.0(Oryza sativa)
STRINGORGLA12G0020700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.15e-10NAC domain containing protein 64