PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA036755-PA
Common NameOsI_37241
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 405aa    MW: 44631.9 Da    PI: 7.2233
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA036755-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.13.2e-22129189359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59 
                       Dgy+WrKYGqK+++g+ +prsYYrCt +   gC +kk v+r+   + +  ++ Y +eH+++
  BGIOSGA036755-PA 129 DGYQWRKYGQKQIEGAMYPRSYYRCTNStnqGCLAKKTVQRNGGGGAAgYTVAYISEHTCK 189
                       9************************9888889**********98776537899*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-23114190IPR003657WRKY domain
SuperFamilySSF1182903.4E-21120189IPR003657WRKY domain
SMARTSM007742.8E-31127190IPR003657WRKY domain
PfamPF031064.4E-22129189IPR003657WRKY domain
PROSITE profilePS5081119.52129170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009658Biological Processchloroplast organization
GO:0010027Biological Processthylakoid membrane organization
GO:0042793Biological Processtranscription from plastid promoter
GO:0000427Cellular Componentplastid-encoded plastid RNA polymerase complex
GO:0009507Cellular Componentchloroplast
GO:0009508Cellular Componentplastid chromosome
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEEAYCMMMV GRERELVAEL RHLLFPSPSP TTPASHSTTA LTGDDECLPP GLTTTTTVSG  60
GGGRRRGRKR VRRDNDNLKL LQADDDQEVL AAAVHGDANA KPLPNFTKTS RRKLQTTTST  120
MVTTVPDFDG YQWRKYGQKQ IEGAMYPRSY YRCTNSTNQG CLAKKTVQRN GGGGAAGYTV  180
AYISEHTCKS IEPSLPPVIL DTTVRATNNH HPPAASSSCA AQSPAAAATS SSSDMMMTST  240
SSTSSETGNW SGQHGAYACR RQMIAADEEY CCWDTPATTT TSGSDGGNSS TCADQTKEDD  300
MLRYKLERVP FLEEKVRKVR ENGKIICLDI NQLMLSQENR FAFTIEVAEE ANSYLEKNRH  360
EYGLKKPILH VLSDRMNEAG FSRPEGYLYP YPIKPGPYFI KEEGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-131291891069OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16472RRGRKRVRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.825100.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154838600.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005000.0BX000500.4 Oryza sativa chromosome 12, . BAC OSJNBb0027B07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619481.10.0WRKY transcription factor SUSIBA2
TrEMBLB8BNX70.0B8BNX7_ORYSI; Uncharacterized protein
TrEMBLB9GBI90.0B9GBI9_ORYSJ; Uncharacterized protein
STRINGORGLA12G0007700.10.0(Oryza glaberrima)
STRINGOBART12G00860.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.19e-15WRKY family protein