PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA036825-PA
Common NameOsI_37112
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 191aa    MW: 21493.5 Da    PI: 8.9267
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA036825-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY941.1e-293286560
                      S-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY  5 ynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
                      ++WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve +  d+++ ei+Y+geHnh+k
  BGIOSGA036825-PA 32 WCWRKYGQKQVKGSEFPRSYYKCTHPTCPVKRKVEMTP-DGRIAEIVYNGEHNHPK 86
                      89************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182906.54E-223187IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.9E-253187IPR003657WRKY domain
PfamPF031067.2E-223285IPR003657WRKY domain
SMARTSM007743.5E-283286IPR003657WRKY domain
PROSITE profilePS5081121.623287IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MAPLKPGIGG GWWANVASED KEEQVIRKWG RWCWRKYGQK QVKGSEFPRS YYKCTHPTCP  60
VKRKVEMTPD GRIAEIVYNG EHNHPKPHPP RKPTLSTSVE TLVATNDAGL ENKLEGCDQA  120
IGSDAVVEAL RGGCHCLDGF RNGNEISDCK KRLFRFGVRF HDGSCKRILA QPHNIINLGS  180
HLVAEYVQEK Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-1432871874WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.502580.0flower| panicle| root| stem
Os.907220.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO335192070.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankBX0725480.0BX072548.4 Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619786.15e-83uncharacterized protein LOC4351243
TrEMBLB8BLR41e-141B8BLR4_ORYSI; Uncharacterized protein
STRINGONIVA12G00200.11e-113(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.13e-24WRKY DNA-binding protein 3