PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA036955-PA
Common NameOsI_37398
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 202aa    MW: 22574.6 Da    PI: 8.8704
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA036955-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.46.7e-24101362128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                         GfrF+P+ e+l+++yL + ++gk+++ +e  i ++d+y +eP+dL  k     +   e+   +fF++ ++++ ++++k+r++ +g+W  + 
  BGIOSGA036955-PA  10 SLGFRFNPSAEDLITFYLPRLIAGKPMKDTEKfICRADVYGSEPSDLAgKfapvpR--CEKGGRFFFTSCKRHKGSSTKKERTAGAGTWVRQN 100
                       57************************7775555**************843454222..255588**************************886 PP

               NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + kev++k g +vg  + + f     ++g+ tdW+m+e + 
  BGIOSGA036955-PA 101 S-KEVKNKAGVKVGETQNFRFK----KDGSYTDWLMEEHHC 136
                       5.999999*************7....78999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-258156IPR003441NAC domain
PROSITE profilePS5100525.1249156IPR003441NAC domain
PfamPF023651.3E-1312135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEKHVEKMLS LGFRFNPSAE DLITFYLPRL IAGKPMKDTE KFICRADVYG SEPSDLAGKF  60
APVPRCEKGG RFFFTSCKRH KGSSTKKERT AGAGTWVRQN SKEVKNKAGV KVGETQNFRF  120
KKDGSYTDWL MEEHHCCRQQ AVAGDEEPVI CRMYVSPRAP PDSAARQESA AFVQQQPAPQ  180
VSEPPCDKKK RDDVAEEAPA AA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005020.0BX000502.2 Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankBX0005040.0BX000504.2 Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619129.11e-150NAC domain-containing protein 41
TrEMBLA0A0E0RDG61e-145A0A0E0RDG6_ORYRU; Uncharacterized protein
TrEMBLA0A0P0Y6T11e-149A0A0P0Y6T1_ORYSJ; Os12g0135850 protein
TrEMBLB8BLY51e-149B8BLY5_ORYSI; Uncharacterized protein
STRINGORUFI12G02480.11e-146(Oryza rufipogon)
STRINGOS12T0135850-001e-149(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04400.16e-14NAC domain containing protein 77