PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA037017-PA
Common NameOsI_37524
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 573aa    MW: 66298.5 Da    PI: 6.4751
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA037017-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.81e-2411100190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +f+ +Y+ ++GF+vrk++++k++ ++++t+++fvCsk+g+r ++k++ + ++++raetr+gC+ ++ +++++ ++k+e+++le  HnH l+
  BGIOSGA037017-PA  11 NFWVTYGGRMGFDVRKKYHNKNQVTQKTTSARFVCSKQGFRGKDKRD-NLTKHPRAETRIGCNVRMGLTLNRvNEKYEISDLEVMHNHILQ 100
                       69******************************************999.99**************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-1811100IPR004330FAR1 DNA binding domain
PfamPF105513.9E-26220314IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MAFSDTEEAW NFWVTYGGRM GFDVRKKYHN KNQVTQKTTS ARFVCSKQGF RGKDKRDNLT  60
KHPRAETRIG CNVRMGLTLN RVNEKYEISD LEVMHNHILQ TPETSHLMPS QRKITEVQAF  120
EIELADDTSI QPRIAHELAA RHVGGSSNLG YTCLDQQNYL RTKRQKELKY GEAGRLLNYF  180
KNKAIDNPSF HYAVKLDSEE QITNIFWAEM IIDYAHFGDV VTFDTTFGTN KESWPFGVFV  240
GFNHFRETVV FGAALMYDET CDSFCWLFDA FLSCHNHKHP QTIYTDQDVA MGKAITEVFT  300
ETRHGLCTFH IMQNANKHIN RQKTSDGSNV LADFSACMCE HEDVEKFEEV FADMRTKVRK  360
GTWLDSVYKL KEKWAECFMK NAYTLGMRST QLSEGLNSDL KEYLNCELNI VRFFHHFDRV  420
VQGKRDKEIK SDLASQAADF EECFAFVDNA LETLGQQVEQ MVEVNTNIQS NLETEFEIPE  480
NVSQAIGLKK KETRCSTSKR KKNWVDKLHK KRKKSLRYAK NGNEVAHPEP LEEDILENST  540
KESHQDFEFL GSYTQLLAGD SDGYELYSEG FHQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1499513RKKNWVDKLHKKRKK
2509513KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619144.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB8BN930.0B8BN93_ORYSI; Uncharacterized protein
STRINGTraes_2AS_BB6B8AC48.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-76FAR1-related sequence 5