PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA037060-PA
Common NameOsI_37614
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 153aa    MW: 15960.6 Da    PI: 9.8772
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA037060-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA42.11.2e-13117144128
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGl 28 
                       C nC + +Tp+WR+gp g +tLCnaCG+
  BGIOSGA037060-PA 117 CLNCDAVETPQWRSGPMGRSTLCNACGV 144
                       99*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.19E-11110145No hitNo description
SMARTSM004012.0E-4111150IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.807111145IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.2E-12115144IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.63E-9116143No hitNo description
PROSITE patternPS003440117142IPR000679Zinc finger, GATA-type
PfamPF003206.9E-11117144IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MDGDGDVGGG GGGGGVRYVL ALPAMASLAV LIAHLDAAVP VPRRPRSYLP RAVPMAWWAF  60
RLPVFRPPPP PPPPPAKNPV KEEEGVARVV VVVAPPPPVD PGEEEAGKRA AKRARRCLNC  120
DAVETPQWRS GPMGRSTLCN ACGVLPQGGR LAA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.526120.0callus| flower| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329783240.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620068.18e-54vegetative cell wall protein gp1
TrEMBLA2ZIG61e-101A2ZIG6_ORYSI; Uncharacterized protein
STRINGOMERI11G18900.11e-54(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-10GATA transcription factor 12