 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
BGIOSGA037077-PA |
| Common Name | OsI_37642 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
| Family |
TCP |
| Protein Properties |
Length: 176aa MW: 17478.4 Da PI: 10.1199 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA037077-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 39.9 | 1.6e-12 | 104 | 132 | 3 | 31 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaar 31
+k++++++hTkv+gR+RR+R++a+caar
BGIOSGA037077-PA 104 LAKRPSKDRHTKVDGRGRRIRMPALCAAR 132
689************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 176 aa
Download sequence Send
to blast |
MDHGGGGGGG GAAPSSSNSG GGSGGGGGGG GRENHPHHPF YYSGPAAAAA AAAAAQQQQQ 60
TFMGALAITP VVAEQPQGSS GGGEKKVVAP TTPAAAGAAA TTTLAKRPSK DRHTKVDGRG 120
RRIRMPALCA ARLPFSCAAA IDEIMWRRVV DGINQAKQSN QSFELLSVPV HCSASH
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AL713933 | 0.0 | AL713933.6 Oryza sativa chromosome 12, . BAC OJ1041_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
