PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA037085-PA

Common Name

OsI_37656

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB_related

Protein Properties

Length: 226aa MW: 24159.9 Da PI: 8.045

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA037085-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.3	4.2e-19	26	70	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEdel+++++++lG++ W++Ia +++ gRt++++k++w+++ BGIOSGA037085-PA 26 RGNFTDEEDELIIKLHELLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 70 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.159	1	20	IPR017877	Myb-like domain
SuperFamily	SSF46689	3.68E-23	7	77	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.2E-12	7	33	IPR009057	Homeodomain-like
PROSITE profile	PS51294	29.116	21	75	IPR017930	Myb domain
SMART	SM00717	4.9E-18	25	73	IPR001005	SANT/Myb domain
Pfam	PF00249	3.9E-17	26	70	IPR001005	SANT/Myb domain
CDD	cd00167	4.34E-14	28	71	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.4E-25	34	72	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MVIGLLRCGK SCRLRWINYL RPDLKRGNFT DEEDELIIKL HELLGNKWSL IAGRLPGRTD 60 NEIKNYWNTH IKRKLLARGL DPLTHRPLNA AAAVAGHHHL AAGGSSCSPD ATSGHSSCSD 120 GDEYRGGIDL NLSISPPSSS SQPSSPPPPP PHEAEARRAG ATASYTYHHH YSETREKICL 180 CLNHLGLHGG DECSCGGSSA SSSSSPPPAT ASSRAFTFAN ASSSTV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-22	7	75	40	108	B-MYB
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.51540	0.0	callus\| panicle\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	297728898	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063027	0.0	AK063027.1 Oryza sativa Japonica Group cDNA clone:001-110-B12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618922.1	1e-120	myb-related protein 308
Swissprot	P81393	2e-55	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A2ZIK8	1e-163	A2ZIK8_ORYSI; Uncharacterized protein
STRING	ORUFI12G05190.1	1e-120	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	2e-53	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]