PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA037431-PA
Common NameOsI_38411
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 259aa    MW: 27079.4 Da    PI: 9.2898
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA037431-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.4e-07123167755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++ r RR+ri s+ +eL +l+P a    ++ +s ae+L+ A ++++ Lq
  BGIOSGA037431-PA 123 AAARERRRRISSKTAELSRLIPGA----ARMNSTAEMLQAAARHVRLLQ 167
                       567899999**************8....577***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.982116166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-9118175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-8119175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-6122172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-5123167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSTATTRLGV RRPTPAPVFD FDRLLLGSSS GGGMVGDDVV ADALLGFAYD PPAHGAAALD  60
DVLAPLPGAD KRPRERGVVA TAGRSAAPGA GAAEAKKGGA AASHDDHDDG RHHHHHNQAV  120
QSAAARERRR RISSKTAELS RLIPGAARMN STAEMLQAAA RHVRLLQAQV GMLALIHSSG  180
EAKAASSMAA SREHHQMMMM RALLASGGVQ ERLAGEGRCL VPTSLVRAIA DDDAMATSNP  240
ALSRDVNSFK DSLDQQQQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL8318081e-155AL831808.4 Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-155AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX2558751e-155BX255875.3 Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126201e-155CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664569.18e-46PREDICTED: transcription factor bHLH52-like
TrEMBLA2ZKR50.0A2ZKR5_ORYSI; Uncharacterized protein
STRINGONIVA12G13030.11e-101(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.19e-21bHLH family protein