PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA037681-PA
Common NameOsI_38899
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 377aa    MW: 39750.2 Da    PI: 4.4682
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA037681-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15e-194594255
               AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  BGIOSGA037681-PA 45 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 94
                      789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.46E-3044101No hitNo description
Gene3DG3DSA:3.30.730.102.6E-2745101IPR001471AP2/ERF domain
SMARTSM003804.6E-3545108IPR001471AP2/ERF domain
PROSITE profilePS5103219.55945102IPR001471AP2/ERF domain
PfamPF008479.0E-144594IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-1945102IPR016177DNA-binding domain
PRINTSPR003675.2E-84657IPR001471AP2/ERF domain
PRINTSPR003675.2E-86884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MPPSMATARV ASPSTDRKRK ASSEDDIDAA AALTSPLAPA RGRKRFVGVR QRPSGRWVAE  60
IKDTIQKIRV WLGTFDTAEE AARAYDEAAC LLRGANTRTN FWPRPSPPPA AVAPPETTTT  120
PALPSKVTNL LLLRLKARNQ QLVDAGAAAP QEAALLQLQQ QTPASCQEVF VRSHGEEYGF  180
HVDDFLSDAC SNEQYSGDSS LGLDDDDGEV EDEEEEELDF QFMDVAPGAS SAAAEAGLGG  240
EGALCSPFEM VAAELGGAVD VAAHDAMRQM DYERKISASL YALTGVSECL RIRAAAGATA  300
AARDHLTGLR EACRKKQKFA AAAAAPPQQQ EPSPPPQQPE TPASSGGGMS ETASGGGGDG  360
DVLMWSSLDL APICHMA
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329948150.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619512.20.0ethylene-responsive transcription factor ERN1
TrEMBLB8BMQ70.0B8BMQ7_ORYSI; Uncharacterized protein
STRINGORUFI12G19000.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-22related to AP2 11