PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA037733-PA
Common NameOsI_38989
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 205aa    MW: 21528.2 Da    PI: 4.2692
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA037733-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-111131531155
                       HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +RR +iN+ + +L++l+P +    +k ++ a++L k+++Y+ksLq
  BGIOSGA037733-PA 113 KRRCKINENLKTLQQLVPVC----DKSNNQASTLDKTIRYMKSLQ 153
                       8******************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.874102152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-5110158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-12113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.90E-10113154No hitNo description
PfamPF000104.6E-9113153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-12115160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MAVSAWGSIV DEESTLTSLC VSPSKVSCVS GAGGDLFDMV WPGRRRREED NTSGCLPLSP  60
PPPPELAVDD QLLAGGDGGG GKPVAVAVAE DDDSGERWTE DQVPTDEGIC VMKRRCKINE  120
NLKTLQQLVP VCDKSNNQAS TLDKTIRYMK SLQQHAQAMS VGCSMKTAAA AGVTCPFLPP  180
PPAINDDACG AGAIDDVYGS SCRVE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7317431e-137AL731743.2 Oryza sativa chromosome 12, . BAC OSJNBa0001B02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-137AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126201e-137CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8BMU61e-147B8BMU6_ORYSI; Uncharacterized protein
STRINGORUFI12G19860.14e-80(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164341012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.14e-13phytochrome interacting factor 3-like 5