PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA037850-PA
Common NameOsI_39227
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 496aa    MW: 58396 Da    PI: 8.2541
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA037850-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.53.4e-2130121190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       kfYn+Y ke GFsvrk+  ++   +  ++ r+++Cs+eg+ ++   + t+ +r++ra tr+gC+a+++++++k +g w v k + +HnH+la
  BGIOSGA037850-PA  30 KFYNRYVKEKGFSVRKNFARRDPVTADVVFRQYTCSREGYWKDIYMDtTNISREPRALTRCGCNARFEIRLDKkKGDWTVVKYVAKHNHNLA 121
                       6***************************************99988774677889******************99****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.7E-2030121IPR004330FAR1 DNA binding domain
PROSITE profilePS508119.32870121IPR003657WRKY domain
PROSITE profilePS509669.371308341IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MADNFRTLEE EEEYHTITAM RFKTEDDGFK FYNRYVKEKG FSVRKNFARR DPVTADVVFR  60
QYTCSREGYW KDIYMDTTNI SREPRALTRC GCNARFEIRL DKKKGDWTVV KYVAKHNHNL  120
AKPDEVAFLR SHRNISDAQK AIVMELRDVG LRQNQVMEVM ERRHGGFEST SFMSRDLYNY  180
FNRMKKKQIL GGDADHVIKY MQARQKDDME YFFEYETDEA GRLKRLFWEA ELDSKASQSV  240
PFTSNEASLI EKDAACLFTP SIFKKVKIEI SKSIDWEVID YIDEDTVHRY VICLKDNPDK  300
VKILNCNYED SILKTLSCPC RKLECESLPC HHIFAVLFHL KLDAIPKFCV ERRWTVQAKN  360
VFPSDRYGEA YTWSDQMERY RRLRSFGSEV LLKCSMSKEC TLKVMEMLEQ LDIETEGCEQ  420
KDIVLTLRGH VVAQSLRTDI ASRDLVHDPM EIVPKGAPTK RLRGFMEKRV RRCGYCRQAG  480
HTIRCCPIYL RKVEDV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.376730.0callus| leaf| panicle| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649607.21e-125protein FAR1-RELATED SEQUENCE 5
TrEMBLB8BN550.0B8BN55_ORYSI; Uncharacterized protein
STRINGOB12G10090.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-27FAR1-related sequence 5