PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA038064-PA
Common NameSub1B-1
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 244aa    MW: 26505.2 Da    PI: 4.6809
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA038064-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-2098147356
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +grW++eIrdp+    + +r++lg+f+ta eAa+a++a +++++g+
  BGIOSGA038064-PA  98 YRGVRQRP-WGRWASEIRDPV----KgARVWLGTFDTAAEAARAYDAEARRIHGH 147
                       9*******.**********75....44**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.01197154IPR001471AP2/ERF domain
SMARTSM003802.9E-3697160IPR001471AP2/ERF domain
CDDcd000183.75E-1898153No hitNo description
Gene3DG3DSA:3.30.730.102.0E-3198154IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-2298155IPR016177DNA-binding domain
PfamPF008471.4E-1298147IPR001471AP2/ERF domain
PRINTSPR003671.9E-1198109IPR001471AP2/ERF domain
PRINTSPR003671.9E-11120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MCGGALIPND YGDKPPPPPS ESSEWDATTK MKKKKKRGGG GDDDWEAAFR EFIAGDVDDD  60
DDGVSMFPSG AGTMETTTEV AVVERPRRRR RVRRSYPYRG VRQRPWGRWA SEIRDPVKGA  120
RVWLGTFDTA AEAARAYDAE ARRIHGHKAR TNFPPDEPPR PAPSQAPFCF LLDDDDDGVA  180
RGNSPASSSA PDSTSACTTS STVASGERGD ELILLECCSD DVMDSLLAGF DVSSESRSIL  240
GMVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1998154663ATERF1
3gcc_A5e-1998154663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18492RPRRRRRVR
28693RRRRRVRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.284060.0leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172333060.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4539640.0DQ453964.1 Oryza sativa (indica cultivar-group) clone BAC 101O9 chromosome 9 map Sub1 locus, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610635.11e-110ethylene-responsive transcription factor 1-like
TrEMBLA0A0E0IHH11e-176A0A0E0IHH1_ORYNI; Uncharacterized protein
TrEMBLQ0N4U21e-176Q0N4U2_ORYSI; ERF protein
STRINGONIVA09G04210.11e-176(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152001318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.12e-15ERF family protein
Publications ? help Back to Top
  1. Xu K, et al.
    Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice.
    Nature, 2006. 442(7103): p. 705-8
    [PMID:16900200]